Apium graveolens (celery): 141721449
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Entry
141721449 CDS
T11340
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141721449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141721449
03041 Spliceosome [BR:
agrv03041
]
141721449
03009 Ribosome biogenesis [BR:
agrv03009
]
141721449
03016 Transfer RNA biogenesis [BR:
agrv03016
]
141721449
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141721449
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
141721449
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141721449
Complex C
U4/U6.U5 tri-SnRNP related factors
141721449
Ribosome biogenesis [BR:
agrv03009
]
Eukaryotic type
Pre-60S particles
Helicases
141721449
Transfer RNA biogenesis [BR:
agrv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
141721449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
141721449
NCBI-ProteinID:
XP_074380479
LinkDB
All DBs
Position
4:complement(302422160..302432097)
Genome browser
AA seq
994 aa
AA seq
DB search
MEGSPSLGKRKLSEEDLGTEARKEESVLKKPNLIRTCVHEVAVPSGYSVVKDESIHGTLS
DPVFTGTMAKTYQFTLDPFQSVSVACLERNESVLVSAHTSAGKTAVAEYAIAMSFRDKQR
VIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLK
EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPC
HVVYTDFRPTPLQHYVFPVGGSGLYLVVDENESFREDNYVKLQDTFAKPKQNDGNRSGNG
KANSRIAKGGSGSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNSQEE
KDIVEQVFRNAILCLNEEDRTLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLV
KALFATETFAMGLNMPAKTVVFSSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICI
IMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRASGQFTAEHVIKNSFHQFQY
EKALPDIGNKVSELEKEAATLDASGEAQVAEYHNLKLEIGHLEKKMMAEITRPERVLYYL
LPGRLVKVREGGTDWGWGVVVNVVKNSSTASGTVPPALSSSRGCSYIVDTLLHCSLGSNE
NGARPKPCPPRPGEKGEMHVVPVQLALISTLSKIRISVPSDLRPAEVRQSILLAVQELGK
RFPQGLPKLNPVKDMGIEEPELVELVNQIETIEKQMMSHPLYKSQDENQIKCFQRKAEVN
HEIQQLKTKMRDSQLQKFRNELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVT
ELMFNGTFNNLDHHQIAALASCFIPGDRSSEQIHLRAELNKPLQQLQDSARRIAEIQHEC
KLEVVVDEYVEAAVRPFLMDVIYCWSKGASFAEVIQMTDIFEGSIIRLARRLDEFLNQLR
AAAHAVGEVDLESKFTAASESLRRGIMFANSLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggagggctcaccgagtcttgggaagagaaagttatcggaggaggatttgggaactgaa
gcgagaaaagaggaatctgttttaaagaagcctaatttgattcgaacatgtgtgcatgag
gttgctgttcctagtgggtacagtgtggttaaagatgagtcaattcatggtactctttca
gatcctgtttttacagggacgatggcgaaaacctaccagtttacccttgatccgtttcag
agtgtttcagtggcatgtttggaacgaaatgaatcggttttggtgtcggcccatacttca
gctggtaaaactgctgttgcggagtatgcaattgcaatgtcttttagagataagcagagg
gtgatatatacttcgccgctgaaagctttgagtaatcagaagtatagagagttgagccaa
gagtttacagatgttggattgatgacaggggatgtcacgctatcgccgaatgcaagttgt
ttggtgatgacaaccgagattctccggggaatgctttaccggggttctgaggttttgaaa
gaagttgcctgggttatatttgacgaaatacattatatgaaggatcgagaacgaggggtg
gtttgggaagagagtattatattcttgccacctgctatcaagatggtatttctttcggca
acgatgtcgaatgccactgagtttgcagaatggatatgcaatatacataaacaaccatgc
catgtggtttacacagattttcggccaacacctctgcagcattatgtgttccctgttggt
ggatcagggttatatcttgttgttgatgagaacgaatcgtttagagaagacaattatgtc
aaattgcaggatacttttgcaaaaccaaagcagaacgatgggaacagaagtggtaatggc
aaagcaaacagtagaattgctaaaggtgggagcggttccggtggttctgatatatacaaa
attgtaaagatgattatggaacggaaattccagcctgttataattttcagctttagtaga
agggaatgtgagcaacatgctatgtcaatgtccaagcttgattttaatagtcaggaggag
aaggatattgtggaacaggttttccggaacgcgatactatgcttgaatgaagaagacaga
accttacctgcaatagaactgatgttaccattactacagagaggcattgctgttcatcac
tctggtcttcttccaattatcaaagagttggttgaacttctcttccaagaaggtttagta
aaagccctttttgccacagagacgtttgctatgggattgaacatgcctgccaaaactgta
gttttttccagtgtaaagaaatgggacggtgatagtcatcgttacattggctctggtgag
tatattcagatgagtggaagagctgggcgtcgcggaaaagatgaccgcggtatctgtatc
ataatgattgatgaacagatggagatgaacaccctgaaggacatggtactgggtaaacca
gctccactagtcagcacattcaggctgagctactattcaattttgaatctgatgagccgt
gcttcgggccagtttaccgctgagcatgtcatcaagaactcatttcatcaatttcaatat
gaaaaggccttgcctgacatagggaacaaggtttctgaactggagaaagaagcagcaacg
ctagatgcatctggagaggcccaagttgctgaatatcataatttaaagctcgagataggt
caccttgagaagaagatgatggcagagataacaaggcctgaaagggttctctattatctt
ctacctggtaggctggtcaaggtacgggaaggtggaacagattggggttggggtgttgta
gtcaatgtggtaaaaaattcttcaacagcatcagggactgtacccccggcattgtcttct
tcacgtggttgcagctatatagtggatacattacttcactgttctcttggttcaaatgaa
aatggtgctcgtccaaaaccatgtccacctcgtcctggagagaaaggcgaaatgcacgtg
gttcctgtgcagctagcacttatatcgacattgagcaaaatcagaatttcagttccttcg
gatcttcgtccagcagaagtaaggcagagtatactgcttgctgtacaggagcttggaaaa
cgttttcctcaaggcctccctaagcttaatcctgtaaaggacatgggtattgaagaacct
gaattggttgagttggtaaaccagattgaaacaattgagaagcaaatgatgtctcatcca
ctatataagtcacaagatgaaaatcaaatcaaatgtttccagaggaaagcggaggtgaat
catgaaattcaacagctgaaaacaaaaatgcgtgattcccagctccaaaaatttcgtaat
gaactgaagaaccggtcacgggttctaaaaaagctgggtcacattgatgctgatggcgtc
gtccagttaaagggccgtgcagcttgcttgatagacacaggagatgaacttcttgtcact
gaattaatgtttaatggcacatttaacaatcttgatcatcatcaaattgcggctctggca
agttgcttcattccaggagaccgatcaagtgaacagatacatttaagagcagaacttaat
aaacctttgcaacaactccaagatagtgcaagaagaattgcagagatacaacatgaatgc
aaattggaagtagtcgtggatgagtatgtggaagcagcagttagaccattcttgatggat
gtcatatactgttggtcaaagggtgcatcatttgctgaagttatacaaatgactgacatt
tttgagggaagtattatacggcttgctagaagacttgatgagtttctaaatcagttgcgt
gctgctgcccatgcagttggagaggttgatttagagagcaaatttacagcagccagtgaa
agccttcgccgtggaatcatgtttgcaaattcactctatttataa
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