KEGG   Apium graveolens (celery): 141723569
Entry
141723569         CDS       T11340                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    141723569
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:agrv03019]
    141723569
   03036 Chromosome and associated proteins [BR:agrv03036]
    141723569
Messenger RNA biogenesis [BR:agrv03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     141723569
Chromosome and associated proteins [BR:agrv03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     141723569
    COMPASS/SET1 complex (yeast)
     141723569
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR3_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_SPT8 Beta-prop_EML Beta-prop_Vps41 Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_ACSF4 WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 PAC11 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_RSE1_2nd Cytochrom_D1 Beta-prop_WDR35_TULP_N VPS11_N Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 141723569
NCBI-ProteinID: XP_074381505
LinkDB
Position
5
AA seq 333 aa
MPGGVQSDREDKVSLELNEEILQSMEVGMAFRDYNGRISSLDFHKTSNFLVTASDDESIR
LYDISNATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG
HHDRVVSLSLCSRKDHFISGSLDRTVLLWDQRADKCQGLLRVQGRPATAYDDQGLVFAIA
FGGYIRMFDVRNYEKGPFEIFSVGGDMSDANAVKFSNDGKHMLLTTMDGHIHLLDSFRGA
LVNTFNVKPVSSTSTLDASFSPEGSYVISGSGDGSVYAWSVRSGKEAASWMSSETEPPVI
KWAPGSLMFVTGSSELSFWIPDLSKLATYVGRK
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgccaggaggagtacaatctgatagagaagacaaggtttctcttgaactcaatgaagag
attcttcaaagcatggaagtcggcatggcttttcgtgattataacggcagaattagttca
ttggactttcataaaacatcaaatttcctggtgactgctagtgatgatgaatcgattcgt
ctatatgatatcagcaatgcaacatgtttaaagacaataaatagcaaaaagtacggggtt
gatctggtctgctttacatctcatcccacaactgttatatactcctcaaagaatggttgg
gacgagtcactgcgcctactttcattgcatgacaacaagtatttgcggtactttaaaggt
caccatgacagagttgtctcccttagcttgtgttctcgaaaagatcactttatctcaggt
tctcttgatcggactgtgttgctctgggaccaaagagcggataaatgtcaaggtctttta
cgagtacaaggaagaccagctacagcctatgatgaccaaggacttgtttttgcaatagct
ttcggaggatacataaggatgtttgatgttcgtaattacgaaaagggtccttttgaaata
ttttctgttggcggagatatgtctgatgcaaatgctgtcaaatttagcaatgatggaaaa
catatgcttttgacaaccatggatgggcatatacatctacttgattccttccgaggcgca
ctagtaaacacattcaatgtcaagccagtttctagcacttccactctggatgcatcattc
agccctgagggatcgtatgttatatcaggttcaggtgatggtagtgtctatgcttggagt
gttcggagcggaaaagaagctgctagttggatgagtagtgagactgagcctcctgtcata
aaatgggctcctggaagtcttatgtttgttacaggatcttctgagctatcgttctggatt
cctgacttgtctaaattggctacctatgtggggagaaagtag

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