KEGG   Apium graveolens (celery): 141723732
Entry
141723732         CDS       T11340                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03082  ATP-dependent chromatin remodeling
agrv03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    141723732
   03083 Polycomb repressive complex
    141723732
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:agrv03036]
    141723732
Enzymes [BR:agrv01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     141723732
Chromosome and associated proteins [BR:agrv03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     141723732
   HDAC complexes
    Sin3A-HDAC complex
     141723732
    BRAF-HDAC complex
     141723732
    REST complex
     141723732
    SHIP complex
     141723732
    MiDAC complex
     141723732
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     141723732
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    141723732
  Chromatin remodeling factors
   NuRD complex
    141723732
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 141723732
NCBI-ProteinID: XP_074381715
LinkDB
Position
5:complement(27770677..27775091)
AA seq 432 aa
MANDDFSGASLPTPGTDASKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYNLH
RKMEIICPFPAGPADIGKFHSSDYVDFLESVTPESLHDHGHARHLKRFNVGEDCPVFDGM
FSFCQASAGGSIGAAVKLNLGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKR
HRRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGHGQGKNYALNV
PLNDGIDDDSFRELFRPVIRKVMEAYQPEAVVLQCGADSLAGDRLGCFNLSVKGHADCLR
FLRSFNVPLMVLGGGGYTMRNVARCWCYETAVAVGVEPDNKLPFNEYFEYFGPDYTLHVR
PTPVENHNSPADLEKIRNLLLDQISRLTHKPSVQFQTAPPVTRVPEEPEQRMDIRPKPRI
WTGEDCESDAEA
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggctaacgacgatttctccggcgcgtcactcccaacccccggaacagacgcgtccaag
cggcgcgtgacgtacttctacgaacccacaatcggcgattattactatggtcaaggccac
ccaatgaaaccccaccgtattcgtatggcccacaatctcatcgtccactacaatcttcac
cggaagatggaaatcatctgtccttttccggcgggtccggccgacatcggaaagtttcat
tcttccgattatgtggattttctggagtcagtgacgccggagtcgttacatgatcatggg
catgctaggcatttgaagaggtttaatgtgggtgaagattgtcctgtgtttgatgggatg
tttagtttttgtcaggcgagtgctggtgggtcgattggagctgctgtcaagttgaatttg
ggggatgctgatattgctattaattgggctggtggccttcatcatgctaagaaatctgag
gcttctgggttttgttatgttaatgatattgttctcgggattcttgagctgcttaagaga
cataggcgagtgttgtatattgatattgacatccaccatggagatggtgtggaagaggcc
ttctacactacagatcgagtaatgactgtgtctttccataaatttggggacttctttcct
ggaaccgggcacattaaagatgttggtcatggtcagggcaagaattatgcccttaatgtg
ccactgaatgatggcattgatgatgacagttttcgtgaactatttagaccggtaattcgt
aaagtgatggaggcttaccagccagaagcagtggttcttcaatgtggagcagattcattg
gctggtgacaggttgggatgcttcaacttgtctgtgaaaggtcacgccgattgccttcga
ttcctcagatcttttaatgttcctctaatggttctgggtgggggtgggtatacaatgcgg
aatgtggcccgatgctggtgctatgagacagcagttgcagttggggtggaacctgacaat
aaattgcctttcaatgaatacttcgagtactttggcccagattacacccttcatgtgcga
ccgactcctgttgagaaccacaactcaccagctgatctggagaaaatcaggaaccttctc
cttgaccagatttccagattgactcataagcccagcgtacagtttcagacggctccacca
gtcaccagagttccagaagagccggaacagaggatggatattagacctaagcctcgtata
tggaccggcgaggactgtgaatctgatgctgaagcttga

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