Apium graveolens (celery): 141723900
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Entry
141723900 CDS
T11340
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141723900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agrv03041
]
141723900
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141723900
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141723900
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
T2SSE
PWI
PhoH
Flavi_DEAD
nSTAND_NTPase5
AAA_16
SRP54
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
141723900
NCBI-ProteinID:
XP_074381943
LinkDB
All DBs
Position
5:complement(42097326..42100925)
Genome browser
AA seq
1032 aa
AA seq
DB search
MASDLKLWVSDKLMSLVGYSEPVTVQYVISVSKKAKSPADIVDSLRDDFKGCDDAALHAF
ALELFEKLGTKKVGENVYMQREREATVLAKKQRMYTLLESDDEEGDGDVGGVVEKKRFRK
RVEVEEDVDNEDVVPKRQKIFKNGEDSESGEEEERLRDQREREEFEKRIRAREAAATRKL
MELKIKGKEDGEVSRKGKGLERNVETLRKVSRLEYFKKRVPKKIEEVRDDLEDELRLMEG
EKLTEAEQRELSHKKEVYELLKKQCHEANDEIDEYRMPDAYDQEGKVNQEKRFSVAMEHY
REIKAADKRYPFAEQKAWEDHQVNKAIMRFGSKDRKPKSEYELVFENQIEFVQDELIHAK
KYKEEQYNELSKKSVARSAFEKLQNDRKTLPVYPYREELLQAIEKHQVLVVVGETGSGKT
TQIPQYLHEAGYTKHGKIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYAIRFEDCTSKK
TVIKYMTDGMLLREFLGEPDLSSYSVVIVDEAHERTVSTDVLFGLVKDIARFRPDLKLII
SSATLDAVRFSDYFDNAPIFKVPGRRFPVEINYTKAPEADYLDAAIVTVLQIHVTESPGD
GDILVFLTGQEEIESAEEILKQRTKSLGTKIAELIICPIYANLPTELQAKIFEPTPKGAR
KVVLATNIAETSLTIDGIKYVIDTGFVKIKSYNPRTGMESLLVTPISKASANQRAGRSGR
TGPGKCFRLYTFHSYSNDMEENTTPEIQRTNLANVVLSLKSLGISDLSEFDFMDPPAQEC
LIQALKLLYALGALNKKGELTKVGRKMAEFPLDPMLSKMIIASDKYKCSDEIISIAAMLS
TGSMIFYRPKKKLVHADNARKLFYAGNVGDHVALLNVYRYWRENGYSHQWCYENYVQVKS
MKRARDIRDQLEGLLERVEIELTSNPGDLESIQKAITSGYFPNSARLQKNGSYKTFKYSQ
TAHVHPSSGSSFNSPKLVVYHELVLTSKEYIRQVTELKPEWLVEIAPHYYRLKDVKDSEA
KKKRPSGEGFAI
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggctagtgatttgaaattatgggtttctgataaattaatgtctcttgttggatattca
gagcctgttactgttcagtatgttattagtgtttcgaagaaagctaaatcacctgctgat
attgttgattctcttagagatgatttcaagggctgtgatgatgctgcattgcatgctttt
gcgcttgaattgtttgagaaacttgggacgaagaaggtcggggagaatgtttatatgcaa
cgagagagggaagcgactgtgctggcgaaaaagcagaggatgtatactctgttggagagt
gatgatgaggagggtgatggtgatgttggcggggtagtggaaaagaagcgttttagaaag
agggttgaggttgaagaggatgtcgataatgaggatgttgtgcctaaacgacaaaagatt
tttaagaatggagaggattctgagtccggggaagaggaagagaggctgcgtgatcagaga
gagagggaggagtttgagaaacggattagggcacgggaggcagctgcaacgagaaagctg
atggagttgaaaattaaagggaaagaggatggagaggtgagtaggaaaggtaagggattg
gaacgaaatgttgagactttgagaaaagtttcaaggctagagtactttaaaaaaagggtg
ccaaaaaagatagaggaagtgagagatgacttagaagatgagttgcgtctgatggagggt
gagaaattgactgaagcagaacagcgtgaattaagtcacaagaaagaggtatatgaactt
ctcaagaagcaatgtcacgaggctaatgatgaaattgatgaataccgaatgcctgatgct
tatgatcaagaaggtaaagtgaatcaggagaagcgattttctgtggcaatggagcattac
agggagataaaggctgctgacaagaggtatccttttgcggagcaaaaagcttgggaagat
catcaggttaacaaggcgatcatgagatttggctcaaaagatcgaaagcctaagtctgaa
tatgagcttgtttttgagaaccagattgagtttgtgcaagatgaattgattcatgctaaa
aagtataaagaagaacaatataatgagttatccaaaaaatctgtagcaagatcagcattt
gagaagcttcagaatgatagaaaaacattacctgtttatccatatcgcgaggaattgctc
caagctatagaaaagcaccaggttcttgttgttgttggcgagactggttctggaaagact
actcagataccccagtatctccatgaggctggttatacaaaacatggaaagatcggatgt
acacagcctcgtcgagttgctgccatgagtgtagctgctagagtctctcaagaaatggga
gttaaacttgggcatgaggttggttatgccatccgctttgaagattgcacttctaaaaaa
accgttatcaaatatatgacagatggaatgttacttcgagagtttcttggggagcccgat
ctttcaagttatagtgtggtgatagtggatgaggctcatgaaagaacggtttccactgat
gtgttgtttggtttagttaaggatattgctcggtttcgtcctgatcttaagttgattatc
tcaagtgcaactcttgatgcggtgaggttcagcgattattttgacaatgctccaattttt
aaagttcccgggagaaggtttcctgttgaaattaattacacaaaagccccagaagctgat
tacttggatgcagcaatagttactgttcttcaaattcatgtgactgaatcccctggagat
ggtgatatattggtctttcttacgggccaagaggaaattgagtcggctgaggagattctt
aagcaacggacaaagagcttgggaacaaaaatagcagagctgattatatgcccaatatat
gcaaacctcccaacagagctgcaagcaaaaatatttgaacctactccaaagggtgcgcgt
aaggttgttctggcaacaaatattgcagaaacatcattgacaattgatgggattaagtat
gttatagatacaggttttgtgaagataaaatcttataatcctcgcacaggcatggagtcc
ttattggtaacacccatctcaaaagcatctgcaaatcaaagggctggccgatctggtcgt
actggtccagggaaatgctttcgactctacacttttcacagctatagcaatgatatggag
gagaatactacaccagaaatccaaagaactaatcttgctaatgttgttctaagtttgaaa
agccttggaatcagtgacctctcagagtttgactttatggatccaccagctcaagaatgt
ttgatacaagccttgaagcttttgtatgctctgggtgctcttaataagaaaggggagcta
acaaaagttggtagaaaaatggctgagttccctctagatcccatgttatccaagatgatt
attgcatctgataaatacaagtgttcagatgaaatcatatcaatcgctgcgatgctttca
acaggaagtatgatattttatcgtccaaagaaaaaactggttcatgccgacaatgcaaga
aagcttttttatgcgggtaatgttggagatcatgtcgcgttacttaatgtatacaggtac
tggagggaaaatggctactcacatcagtggtgttatgagaattatgtacaggtcaagagc
atgaagcgtgctagagatataagagatcagttagaaggattattggagcgggttgaaatt
gaactgacatctaatcctggtgatttggagtctatacagaaagccataacatcaggatac
tttcccaactctgcaaggctgcagaagaatggatcatacaaaacttttaagtatagccaa
actgctcatgtccatccgagttctggttcatcatttaattctccaaaattggttgtctac
catgaattagtactaacatctaaagagtacatacgccaggtgactgaactaaaaccagag
tggctggtcgaaatcgctcctcactattatcggctaaaggatgtgaaagactcggaagca
aaaaagaaaaggccaagtggagagggttttgccatttga
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