Apium graveolens (celery): 141724138
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Entry
141724138 CDS
T11340
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141724138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141724138
03036 Chromosome and associated proteins [BR:
agrv03036
]
141724138
Enzymes [BR:
agrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141724138
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
141724138
mRNA degradation factors
5'-3' decay
Decapping complex
141724138
Chromosome and associated proteins [BR:
agrv03036
]
Eukaryotic type
Gene silencing
piRNA pathway
141724138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141724138
NCBI-ProteinID:
XP_074382244
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All DBs
Position
5:67467938..67477115
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AA seq
485 aa
AA seq
DB search
MNSRGRYPPGIGGAGGGNTNPNPNYQQRNPNPNQQYVQRNFMQNPQQFNQQPQQQWLRRN
QIGGDSGAEEVEKTVQSEGSDASSNDWKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKR
ELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQENNVI
QVVILVPTRELALQTSQVCKELGKHLNIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI
LDLAKKGICNLQNCAMLVMDEADKLLSPEFQPSIEHLISFLPTNRQILMFSATFPVTVKD
FKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNR
VELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVV
INFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ
AIYCQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaactcgcgaggtaggtatccgccgggaatcggcggcgccggcggcggaaacaccaat
cccaaccctaattaccaacaacgtaaccctaaccctaaccagcagtatgttcagaggaat
tttatgcagaatcctcagcaatttaatcaacagccgcagcagcagtggctgagaaggaac
caaattggaggcgattcaggagccgaggaggtcgagaagactgtgcagtctgaaggctct
gatgcgagctcaaacgattggaaggcacaattaaagcttccaccacaagatactcgatac
aggactgaggatgtaacagcaactaaaggaaatgaatttgaagactattttcttaaacgt
gagcttcttatggggatctatgagaagggttttgagaaaccatctccaattcaggaggaa
agcatacccattgctttgaccggcagtgatattcttgctagagctaaaaatggcactgga
aaaacagctgctttttgcattcctgcattggaaaagattgatcaagaaaataatgtgatt
caagtcgttatacttgttcctacacgagaattggctcttcagacttcacaagtctgtaaa
gagcttggcaaacacttgaatattgaagtcatggttacaactggtggcactagcttgaaa
gatgatatcatgcgtttatatcagccagttcatttactagttggtactcctgggagaata
ctagatcttgcaaagaagggtatttgcaacttgcagaattgtgcaatgcttgttatggat
gaggctgataagctcttatccccggagttccaaccttccatagaacacctcattagcttt
ttgcctacaaatcgtcaaattttgatgttttcagccacatttccggtgacagtcaaggat
ttcaaggatagatatctacagaagccctatgttattaaccttatggatgagcttactctt
aagggaataacccaattttatgcttttgttgaagaaaggcagaaaatacactgcctcaac
actctcttttcaaagcttcaaatcaaccagtcgatcatattctgcaattctgtgaaccgt
gtggagcttctggccaagaaaattactgaacttggttattcatgcttctatattcatgcg
aagatgcttcaggaccaccgaaacagagtatttcatgattttcgcaatggtgcatgcagg
aatcttgtttgcactgatctttttacaagagggatagatattcaagctgtcaacgttgtc
ataaattttgattttccgaaaagcgcagaaacttatctccacagggtcgggcgatctggg
agatttggacaccttggtttggcagtgaatctgatcacttatgaagaccgcttcaacttg
tatagaattgagcaagaacttgggactgagataaagcaaattcccccacatatagatcag
gctatatactgccagtga
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