Agrobacterium sp. 13-2099-1-2: A6U84_04600
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Entry
A6U84_04600 CDS
T11288
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
agrz Agrobacterium sp. 13-2099-1-2
Pathway
agrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6U84_04600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrz03019
]
A6U84_04600
Messenger RNA biogenesis [BR:
agrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6U84_04600
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
UZX42595
LinkDB
All DBs
Position
Circular:917469..919136
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AA seq
555 aa
AA seq
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MTKQDELVFLPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGLDLPGVDLVLPDIS
YIAEQKKNLKGIIITHAHEDHYGALNDLWPGLNVPVYASGFTAGMLEAKRAYEGSRAEIP
ITPFKAGDRINVGPFEIEAVGVNHSIPEPMSLVIRTPLGNVIHTGDWKIDEAPSLGPLTD
EARFRAIGEEGVLALMCDSTNSLRDGVSPSEHEVSEGLRQIIENAEGRVAITTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRNKVVVILT
GSQGEPRAALAKLSRDEMRNVALAAGDTVVFSSRAIPGNEKAIIEIKNGLIEQGIHIVTD
NEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN
ILRLAPGPAEVINDAPHGRVFKDGNLIGDLDEMGISNRRKLSFAGHVSVNVLLDSRYDFL
GDPDVVPFGLPEFDDEGEDMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ
AWGKKPIVTVFVTKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgactaaacaggacgaactggtatttctgccgcttggcggcgtcggtgaaatcggcatg
aatctggcgctgtacggctacggtccggaaagcaagcgccaatggatcatggtggattgc
ggcgttacctttgccggtctcgatctgcctggtgtcgatctggttctgcccgatatcagc
tatatcgccgagcagaagaagaacctcaaaggcatcatcatcacccacgcccatgaggat
cactacggcgcgctgaacgatctgtggccgggcctcaacgtgcccgtctatgcctcgggt
ttcaccgccggcatgctggaggcaaagcgcgcctacgagggcagtcgtgccgaaattcca
atcaccccgttcaaggcgggtgatcgcatcaatgtcggccctttcgaaatcgaggccgtc
ggcgtcaaccattcgatccccgagccaatgtcgctggtcatccgcacgccgcttggcaat
gtcatccacacgggcgactggaagattgacgaggcgccgtctctcggtccgttgacggat
gaggcgcgtttccgcgccatcggcgaggagggcgtgctggcgttgatgtgcgacagcacc
aactcgctgcgtgacggcgtatcgccttcggagcacgaagtgtctgaggggctgcgccag
atcattgaaaatgccgagggtcgcgtggccatcaccaccttctcctccaatgtcggccgt
atccgctccatcgcgcaggctgcggaagctgccggacgcgaagtgctgctgctcggctcg
tcgctgaagcgcgtcgtcaacgtttcgcaggatctcggcatcatggaaggtatcaagccg
ttcctggctgaagacgaatacggctatattccgcgcaacaaggtggtcgtcattctcacc
ggttcgcagggtgagccgcgggcagcccttgccaagctttcgcgcgatgagatgcgtaat
gtggcgctggctgccggtgatacggtggtattttcctcgcgcgccattcccggcaacgaa
aaggcgatcatcgagatcaagaacggcctgatagagcagggcatccatatcgttaccgac
aatgaggctttggtgcatgtctccggccatccccgccgtaacgaacttctgaggatgtac
gaatggaccaagccgcaaatcctggtgccggtgcatggcgaggcggcgcatctggtggcg
cagaaggaactggccgaacaggccggcatttctcaggtgccgaaggttcgtaacggcaac
attctgcgtctggcgcctggtcctgcggaagtcatcaacgacgcaccgcacggccgcgtc
ttcaaggacggcaacctcatcggtgacctcgacgagatggggatcagcaaccgccgcaag
ctttccttcgccggccatgtctccgtcaatgtgctgctggacagccgctacgacttcctc
ggagatcccgatgtcgtacctttcggcctgccggaattcgatgatgagggcgaggatatg
gaagatacgctctatgacgccgtactcggcgccgtggaaagcatcccccgggcccgccgc
aaggatcttgcgctgctgcgcgagtcagtgcgccgcgccgtacgcgccgctgccaatcag
gcatggggcaagaagccgatcgtgacggttttcgtcaccaaggtctga
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