Agrobacterium sp. 13-2099-1-2: A6U84_08305
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Entry
A6U84_08305 CDS
T11288
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
agrz Agrobacterium sp. 13-2099-1-2
Pathway
agrz00470
D-Amino acid metabolism
agrz00550
Peptidoglycan biosynthesis
agrz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
agrz00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
A6U84_08305 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
A6U84_08305 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
agrz01011
]
A6U84_08305 (murD)
Enzymes [BR:
agrz01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
A6U84_08305 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
agrz01011
]
Precursor biosynthesis
Amino acid ligase
A6U84_08305 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
2-Hacid_dh_C
MurD-like_N
TrkA_N
KARI_N
NAD_binding_2
UDPG_MGDP_dh_N
Motif
Other DBs
NCBI-ProteinID:
UZX40763
LinkDB
All DBs
Position
Circular:complement(1664033..1665442)
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AA seq
469 aa
AA seq
DB search
MIPVSSFRDKKVALFGLGGSGLVTARALVAGGADVVAFDDNPDSVAKAEAEGITTADLRT
IDWHSFSSFVLAPGVPLTHPKPHWSVDLARAAGVEIIGDIELFIRERRAHAPDCPFIAIT
GTNGKSTTTALIAHILKASGRDTQLGGNIGTAVLSLDPPKAQRFYVVECSSYQIDLAPTI
NPTAGILLNLTPDHLDRHGTMQHYADVKERLVAGSGTAIVGVDDSYSTLIADRIERAGVK
VERISKRNVVSEGLYAEGSRILRAHGGKSSLLVDLDGIQTLRGSHNAQNAAAAIAACLAV
GVSEEDVRAGLKSFPGLKHRMQPVGRRGNVTFVNDSKATNADAAAPALSSYERIYWIAGG
LPKAGGIASLAPLFPRIAKAYLIGEAAAEFAATLGEAVPYEISGTLDKAVQHAAADAEKD
ATAGNIVMLSPACASFDQYKNFEIRGDSFVAQVAALDGMTMLVHSGKGG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgatcccggtctcgtcgttcagagataagaaggtcgcgcttttcgggcttggcggttcg
ggccttgtcacggcccgggcgctggttgccggcggggcggatgtcgttgctttcgacgat
aatcccgacagcgtcgccaaggctgaggccgaagggataacgacggctgatcttcgaacg
atagactggcattccttttcgtctttcgtgctcgcacccggcgtgccgctaacgcatccg
aagccgcactggtcggtcgatcttgcccgggcggcgggtgtcgagattatcggcgatatc
gagcttttcattcgcgagcgccgagcgcatgcgccggattgccccttcatcgccatcacc
ggcacgaacggcaaatccacgacgaccgcactgattgcccatatcctcaaggcttcgggc
cgcgatacacaactcggcggcaatatcggcactgcggtgctgagcctcgatccgccgaaa
gcgcaacgtttctatgtcgttgaatgctcgtcctaccagatcgatctggcgccgacgatc
aatccgacggccggcattctgctcaatctgacgcccgaccatctcgaccggcacggcacc
atgcagcattatgccgatgttaaggaacggcttgtggcgggcagtggcacggcaattgtc
ggcgttgatgacagctattccacgctgatcgccgaccgcatcgagcgtgccggcgtgaag
gtggagcgcatttccaagcgcaatgtcgtttccgaaggtctttatgccgaaggcagccgc
atcctgcgggcgcatgggggcaagtcctcgctgctggtcgatctcgacggcatccagacg
cttcgcggcagccacaatgcccagaatgcagcggctgcaattgccgcatgccttgccgtc
ggcgtttccgaagaggacgttcgcgcaggtctcaagtccttccccggcctaaaacatcgc
atgcagccggtcggtcggcgcggcaatgtcactttcgtcaatgacagcaaggcaaccaat
gccgatgccgcggcaccggccttgtcgagctatgagcgcatctattggatcgcgggcggt
ctgccaaaggccggcggcattgccagccttgcgcccctttttccgcgcatcgccaaggcc
tatctgatcggcgaggcggcggcggaatttgcagcgacgctcggcgaagccgtgccttat
gaaatatccggcacgctggacaaggcggtgcagcatgcggcggcggatgcggaaaaagat
gcgacggccggcaatatcgtgatgttatccccggcttgcgcaagcttcgaccaatataag
aactttgaaatcagaggtgattcgttcgtcgcgcaggttgcggcgctcgatggcatgacg
atgctcgttcactctggaaaagggggctga
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