Agrobacterium sp. 13-2099-1-2: A6U84_09420
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Entry
A6U84_09420 CDS
T11288
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
agrz Agrobacterium sp. 13-2099-1-2
Pathway
agrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6U84_09420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrz03019
]
A6U84_09420
Enzymes [BR:
agrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A6U84_09420
Messenger RNA biogenesis [BR:
agrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6U84_09420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NAT10_TcmA_helicase
AAA_19
CMS1
Flavi_DEAD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UZX40968
LinkDB
All DBs
Position
Circular:1906945..1908423
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AA seq
492 aa
AA seq
DB search
MTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI
IEMLMKQADRPANRTTRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQL
QLEKGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKS
LNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL
VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIDIPVASGERPAGLASPTRPNNNNRGRNNNGGQPRGPREGGRHNGEPRPSRHHA
PRDADNDLEVTSDFKRVKTAEGDAGRPAGPRKQRRPARKPGGSGGNRHAPAGGNGQEKRA
SGNGNGNRGRNR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctctgaaaagattgtggccagcgttacccagctc
ggctacacaacccccacccccattcaggcaaaggccattccgctgctgcttgaaggccgt
gatctcatcggcctcgcacagaccggcacgggcaagacagcagcattcggcctgcccatc
atcgaaatgctgatgaagcaagccgaccgcccggcaaaccgcaccacccgcaccctcatc
cttgcaccgacccgcgaactggtgaaccagatcggcgaaaacctgcgctccttcgtgaag
aagacgccgctgcgcatcaaccaggttgtcggcggcgcgtcgatcaacaagcagcagctt
cagctcgaaaaaggcacggacgtcctggtggcgacacccggccgcctgctggacctcatc
gcccgcaacgcgatctcgctttccaaggtcacctatctggtgcttgatgaagccgaccag
atgctcgatctgggcttcattcacgatctgcgcaagatttccaagatggttccggccaag
cgccagaccctgctgttttcggcaacgatgccgaaggcgatttccgagcttgccagcaac
ttcctgacggacccgatcaaggtcgaggtaacacctccgggcaaggccgccgacaaggtc
gagcagtacgtgcatttcgtcgccggcaagaatgacaagaccgaccttctgaagaagtcg
ctcaacgaaaacccggatggccgatcgatcgttttcctgcgcaccaagcacggcgcggaa
aagctctacaagcatctggaacatatcggcttcaaggtcgcttccatccacggcaacaag
agccagggacagcgcgagcgggcactgaagggcttcaaggacggtgagatcaaggttctg
gtcgcaaccgacgtcgctgcccgcggcatcgatattccggccgtgacgcacgtcttcaac
tacgacctgccggaagtgcccgacgcctatgtccaccgcatcggccgtaccgcccgtgcc
ggccgcgacggcattgccatcgcgttctgcgcaccggacgaaacacgtctgctgcacgat
atcgagaagctgatgaagatcgatatcccggttgcatccggtgaacgtccggccggtctt
gccagcccgacgcgcccgaacaacaacaaccgtggtcgcaacaacaatggcggccagccg
cgtggaccccgcgaaggcggacgccacaatggcgagccccgtccctcgcgtcaccacgcc
ccgcgtgatgcggacaacgatctggaagtcacgtcagacttcaagcgcgtgaagacggcg
gaaggtgacgcaggtcgcccggccggccctcgcaagcagcgccgccctgcccgcaagccc
ggcggcagcggtggcaaccgtcacgctcctgctggcggcaacggtcaggaaaagcgcgct
tccggcaacggaaacggcaatcgcggccgtaaccgctaa
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