KEGG   Agrobacterium sp. 13-2099-1-2: A6U84_11980
Entry
A6U84_11980       CDS       T11288                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
agrz  Agrobacterium sp. 13-2099-1-2
Pathway
agrz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:agrz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A6U84_11980 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:agrz03021]
    A6U84_11980 (rho)
   03019 Messenger RNA biogenesis [BR:agrz03019]
    A6U84_11980 (rho)
Transcription machinery [BR:agrz03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     A6U84_11980 (rho)
Messenger RNA biogenesis [BR:agrz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     A6U84_11980 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 NACHT DUF6360 AAA
Other DBs
NCBI-ProteinID: UZX41451
LinkDB
Position
Circular:complement(2468573..2469838)
AA seq 421 aa
MAEMKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELELPTSKDLSSRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
LDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQTKTNSDFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaacttaagagcaaatcgcctaccgacttgctaactttt
gctgaatccctggaagttgaaaatgcgagcaccatgcgcaagcaggagcttatgttcgca
atcctcaaggttctcgcgagccaggacatcgaaattatcggcgaaggcgtcgttgaagtc
ctgcaggacggtttcggttttctacggtccgcaaatgcaaattatctgccgggtccggac
gatatctacatttcgccctcgcaaattcgccgtttctctctgaagaccggcgatactgtc
gaggggccgatccgtggacccaaggaaggcgaacgttatttcgcgcttctcaaagtcaac
acgatcaattttgacgatcctgaaaagatccgtcacaaggttcacttcgataacctgacg
ccgctttatccgaatgagcggttcaagatggagctggagcttccgacatcgaaggatctg
tcgtcgcgtgtgatcgatctggtcgcgccacttggcaagggccaacgtggattgatcgtc
gccccgccgcgtaccggtaaaactgttctcttgcagaacatcgcgcattccatcacggct
aaccatccggaatgttacctgatcgttcttctgatcgacgaacgtccggaagaagtcaca
gacatgcagcgctcggtcaagggtgaggtggtgtcgtcaaccttcgacgaaccagctgta
cgccacgtccaggtggccgaaatggtcatcgaaaaggcgaagcgccttgtcgaacatggc
cgcgacgtcgttatcctgctcgattccatcacccgcctcggccgagcttataacacggtc
gttccgtcttccggcaaggttctgaccggtggtgtggatgccaacgcgctgcagcggccg
aagcgattcttcggtgccgcacgtaacatcgaagaaggtggttcgctgacgattatcgcg
accgcgctgatcgacaccggcagccgcatggacgaagtcatctttgaagaattcaagggt
acgggtaactcggaaatcgtgcttgaccgtaaggtcgctgacaagcgtatcttcccggcg
ctcgatattctcaagtccggtacacgtaaggaagacctgctcgtgccgcgtcaggatctc
cagaagattttcgtgcttcgtcgaattctcgcgccgatgggaacgatggatgccatcgag
ttcctgatcgacaagttgaagcagaccaagacaaattcggatttcttcgaatcgatgaat
acctga

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