Agrobacterium sp. 13-2099-1-2: A6U84_12050
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Entry
A6U84_12050 CDS
T11288
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
agrz Agrobacterium sp. 13-2099-1-2
Brite
KEGG Orthology (KO) [BR:
agrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agrz03032
]
A6U84_12050 (gyrB)
03400 DNA repair and recombination proteins [BR:
agrz03400
]
A6U84_12050 (gyrB)
Enzymes [BR:
agrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
A6U84_12050 (gyrB)
DNA replication proteins [BR:
agrz03032
]
Prokaryotic type
DNA Topoisomerases
A6U84_12050 (gyrB)
DNA repair and recombination proteins [BR:
agrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
A6U84_12050 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
UZX41465
LinkDB
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Position
Circular:2479905..2482340
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AA seq
811 aa
AA seq
DB search
MTETSSSEVGANTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE
ALAGHADLVTVTLNADGSVTVTDNGRGIPTDIHSSEGVSAAEVIMTQLHAGGKFDQNSYK
VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF
LASPDTFTMTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIKQEELLYDGGLEAFVRY
LDRAKKPLVDKPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA
LTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV
VESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALDIASLPGKLA
DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQEIG
TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY
IAQPPLYKVTRGKSVQYLKDEKALEEYLISMGIEDTSLTLGSGEVRIGADLREVILDAVR
MRTLIDGLHSRYSRSIVEQAAIAGALNPELSADAARAQETVAEVARRLDMIAEETERGWS
GLVLEDGGLRFERMVRGVKEISTLDMGLIGSVDARHIDQLAARTRDIYVTPPVLQRKDGT
MELAGPRALLDAIFAAGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVKVNDATDA
DGLFSRLMGDEVEPRRDFIQENALSVANLDI
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaacatcgtcaagcgaagtcggcgccaacactgaatacggagccgattcgatc
aaggtcctgaagggtcttgatgctgtgcgcaaacggcccggcatgtatatcggcgatacc
gatgacggctccggtctgcatcacatggtctacgaggtggtcgacaacgccatcgacgag
gctcttgcgggtcatgccgatctggtgacggtaacgctcaacgccgatggttcggtgacg
gtaacggacaacggacgcggcattccgactgatatccattcttccgagggcgtttccgcc
gcggaagtcatcatgacccagcttcatgcgggcggaaaattcgaccagaactcctacaag
gtttccggcggtctgcatggcgtgggcgtttcggtcgtaaatgcgctttcggtttggctg
aagctcagaatccgccgcaatggcaagctgcacgaaatcggcttcacccatggggttgcc
gatgctccgctctcggtcattggcgaatatgagggccgctccggcacggaagtcaccttc
ctggcgagccccgacaccttcaccatgacggattatgattttggtacgctggagcatcgc
ctgcgcgaactggcgtttttgaattccggtgttcgtatcgtgctcaccgacaagcgtcat
tctgatatcaaacaggaagagttgctctacgatggcggtcttgaagccttcgtgcgttat
ctcgaccgggccaagaaaccgctggtggacaagccggtcgccattcatggcgaaaaggac
ggcatcacggttgaggtcgcgctctggtggaacgacagctaccacgaaaatgtgctctgc
ttcaccaacaacattccccagcgcgacggcggcacccatatggctggcttccgcgcggcg
ctcacgcgtcagatgacatcctatgccgagacttccggcatcatgaaaagggaaaaggtc
agcttgcagggtgaggactgccgcgaaggactgacggcaattctttccgtcaaggttccc
gaccccaagttttcttcgcagacgaaggacaagctcgtttcgtctgaagtgcgccctgtc
gtggaaagtctcgtcaatgaggccctgtccacctggctagaggaacatccgtccgacgcc
aagattcttgtcggcaaggtggtggaagcggccattgcccgtgaagccgcccgcaaggcg
cgcgaactgacgcgccgcaagggtgcgctcgatatcgcctctctgcccggcaagctcgcc
gattgttccgaacgcgatccggcgaaatccgaactcttcctcgtcgagggtgactccgca
ggcggttcggccaagcagggccgctcgcgcgaaacgcaggccatcctgccactacgcggt
aagatcctgaacgttgagcgcgcccgtttcgacaagatgctgtccagccaggaaatcggc
acgctgatcaccgcgctcggcacgtcgatcggcaaggacgaattcaacgcagacaagctg
cgctaccacaagatcatcatcatgacggatgctgacgtcgacggcgcccacattcgtacc
ctgctgttgaccttcttcttccgccagatgccggaactgatcgagcgtggccatctctat
atcgcccagccgccgctttataaggtgacgcgcggcaaatccgtgcagtatctcaaggat
gagaaggcgctggaagaatatctgatctcgatgggcatcgaggatacgtcgctgacgctc
ggctccggcgaagtacgcatcggcgctgaccttcgtgaggtcattctcgatgcggtgcgc
atgcgcacgctgatcgacggtctgcattcccgctacagccgctccatcgtggaacaggcc
gccattgcgggtgccctgaaccccgagctttcggccgatgctgcccgtgcccaggaaacc
gttgccgaagtggcccggcgtctggacatgatcgcggaagaaaccgaacgcggctggtcc
ggcctggtgctggaagatggcggcttgcgcttcgagcgcatggtacgcggtgtcaaggaa
atctcgacgctcgatatgggcctgatcggttcggtcgatgcccgtcatatcgatcagctc
gcggcccgcacgcgcgatatttacgtcactccgccggttctgcaacgcaaggacggcact
atggaactggccggaccgcgtgcgcttctggatgctattttcgccgccggccgcaagggt
ctttccatgcagcgttacaagggtctcggtgaaatgaacgccgagcagctgtgggaaacc
acactcgacgccaatgtacgttcgctgctgcaggtcaaggtcaacgatgccacggatgcc
gacggcctgttttcgcgcctgatgggcgatgaggtggaaccgcgccgcgacttcattcag
gaaaatgcgctcagcgttgccaatctcgacatttaa
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