Aphis gossypii (cotton aphid): 114119078
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Entry
114119078 CDS
T05869
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114119078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114119078
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114119078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
114119078
NCBI-ProteinID:
XP_027836347
LinkDB
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Position
2:46552293..46558699
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AA seq
542 aa
AA seq
DB search
MSDNGDDDQWLYGDSNSNLDPVGALVEDIKPAKPPGILEDEEARLMEFLANPGPGSIDVL
PTVKELNDEDPNRPRSPETFLGGPGIQAEALVNPTDDLFETNQLETATEVGINIPEKEVE
ENNEDKQISSEDSEEDSDDDIVVAAGNFTLSSMENNMVSLSQQNNASPSTAGINLKRNNL
LTLTNIPGISSGNKHQGKFNVEDFESMGTINGVPAHEYSIETTEEKPWLKPGADITDYFN
YGFNENTWLAYCERQRKMRCNESLVGMSTLAMHNQQVSISTTNNNLIPTLDVKTSSTKFQ
PPSIPPKENTIEVMTAERREYSRKHFSTPDLSVPPPIIPTNFDVPPPMIQNSINSIPPPG
FGPPQMNVPYEPEYYPHEPDPYYNTFEPTQDMQWNQSWAPNVKSIENIPTLSNGDSYNKD
LVRDKEYYASRVKKEPEERSYERDRESRNRYRERERERDRERDRDRDSERSRHRESDGVE
SPEASYKEEREYKHKSHRHRSRSRSHEKRSRKHKSRSRSGSRHRHKKKKKKSEKNKEDDN
SE
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaacggtgatgatgaccagtggttgtatggtgactcaaattcaaatttagac
cctgttggtgcattagtcgaagatattaaaccagctaaaccacctggtattttagaagat
gaggaggcacgtcttatggagttcttggcaaaccctggaccaggaagtatagatgtccta
cctacagtaaaagaattaaatgatgaagatcccaatcgacctcgaagcccagaaacattt
ttagggggaccaggaatccaagctgaggcacttgttaaccctacagatgatttgtttgaa
actaaccaattagaaactgcaactgaagtgggcatcaatattcctgaaaaagaagttgaa
gagaataatgaagataaacaaatatcatcagaagatagcgaagaagatagtgatgatgac
attgttgtggcagctggaaattttacattgtcttctatggaaaataatatggtatcactt
tcacagcaaaataatgcaagcccatcaactgctggaataaatttaaaacgaaataattta
ctaacattaacaaacattcctggaatatcatctggaaataaacaccaaggaaaatttaat
gttgaagattttgaaagtatgggcaccataaatggtgttcctgcccatgagtattctatt
gaaactacggaagaaaaaccatggctaaaaccaggtgcagatatcacagattattttaat
tatggatttaacgaaaacacatggttggcatattgtgaacgccaaagaaaaatgagatgt
aatgaatcattagttggaatgtcaacattggctatgcataatcaacaagtttctataagt
actacaaataataatttgattccaactttggacgttaaaactagtagtacaaaatttcaa
ccacccagtattccacctaaggaaaacactattgaggttatgacagctgagagaagagaa
tatagtcgtaaacatttttcgactcctgatttatcagtaccccctccaataattcctaca
aattttgatgtacctccaccaatgattcaaaattctataaactctataccaccccctgga
tttggtcctccacaaatgaatgtgccttatgaaccagaatactatcctcacgaaccagat
ccatattataatacatttgaacctactcaagatatgcaatggaatcaaagttgggcccca
aatgtaaaaagtattgagaacattccaactctatcaaatggagattcttacaacaaagat
ttggtaagagataaagaatactatgcatcacgtgttaaaaaagaaccagaagaaagatca
tatgaacgagatcgtgagagtcgaaatcgataccgcgaaagggaaagggagagagatcgt
gaacgtgacagagacagagacagtgaacgtagcagacatagggaaagtgatggtgttgaa
agtccagaagcaagttataaagaagaaagagaatacaaacacaagtctcatcgtcatcgc
tctcgaagtcgtagtcatgaaaaacgttctaggaaacacaagtctcgtagtagaagtgga
tctagacatcgtcataaaaagaagaaaaagaagtctgagaaaaacaaggaagatgataac
agtgaataa
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