Aphis gossypii (cotton aphid): 114119994
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Entry
114119994 CDS
T05869
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ags
Aphis gossypii (cotton aphid)
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ags03041
]
114119994
03016 Transfer RNA biogenesis [BR:
ags03016
]
114119994
Enzymes [BR:
ags01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114119994
Spliceosome [BR:
ags03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114119994
Transfer RNA biogenesis [BR:
ags03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114119994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
DUF592
Motif
Other DBs
NCBI-GeneID:
114119994
NCBI-ProteinID:
XP_027837552
LinkDB
All DBs
Position
3:5090252..5092786
Genome browser
AA seq
725 aa
AA seq
DB search
MAAAFEEMGVLPEIGKAIDEMDWLLPTDIQAEAIPLILGGGDVLIAAETGSGKTGAFCLP
VIQIVWETLKQGGKQRNSLPVSASSVTDPWAMSVWDRSSSIAVTPDGKKCQSREQKDWHG
CRATKGVKNSGKYYFETTVTDEGLCRVGWSTPGAVLDLGTDKFGFGFGGTGKKSNNKQFD
SYGESFGLHDTIGCWLDLDNWTIGFSKNGTYLGDAFKIPANLKTSAFYPAVVLKNAEIAF
NFGESSFKYDIPKDFIAVSKAASNRIELSQCNAPKIDSNTKKPNNAPYAIIIEPSRELAE
QTFNQIKKFKKYLEEPQVKDLLVVGGFSIKDQIAALSSGVDIIVATPGRLEDLISGGHLS
LSHCRFYILDEADGLLKQRYTKLIENLHEKMPKVACDGKRLQMIVCSATLHDFEVKKLAT
RLMHFPTWVDLKGEDAVPETVHHVVVTVDSQKDSSWTCLKNPIPTDGVHDRDNIRALNTS
EALSQGVKLLKGEYCIKAINKHKMDKALIFCRTKLDCDNLEKYFKQLGSFYTCCTLHGSR
NVNDRRMNLEKFKNGEIKFLICTDVAARGIDVNGLPFMINMTLPDDKTNYVHRIGRVGRA
ERMGLAISFVATIPEKVWYHGEWCPSRGQRCSNTNLTTNKGCCIWYNEPQYLAEIEDHLN
ITIPQVGSELDIPMNEFDGKVVYGKKKENKGPSYKNHYDQLLSTINELTQLETKAQYLYL
HMLNN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgtttgaagagatgggcgttttgcccgaaataggtaaagccatcgacgaa
atggactggctgttgcctacggatattcaagcggaagcgatacctctaatactcggaggt
ggtgacgtgttaatagccgcagagactggtagtggtaaaacgggagcgttttgtctgccg
gttattcaaatagtgtgggaaactctcaaacaaggcggcaaacagcgaaatagtttaccg
gtcagtgcgtctagtgtcacagatccatgggccatgagcgtgtgggaccgttcatcttcc
atagccgtgacgcccgatggtaaaaaatgccaatcaagagagcaaaaggattggcatggt
tgtagagctactaagggcgttaaaaattcgggaaagtattattttgaaacaaccgtcact
gatgaaggtctgtgtcgagttggctggtctacaccaggagctgttttagatctgggtaca
gataaatttggttttggttttggtggaacaggcaagaagtcgaataacaaacagtttgat
tcttatggagaaagttttggtttacatgatacaatcggctgttggttagatctggacaac
tggactattggattcagcaaaaatggtacatatcttggtgatgcatttaaaatacctgca
aatttaaaaacctctgcattttatccagctgtagtactaaaaaatgctgaaatagcattt
aattttggtgagtcatcatttaaatatgatattcccaaagacttcattgctgtaagtaaa
gcagctagcaatcgcattgaactctctcagtgtaatgctccaaaaatagattctaataca
aaaaaaccaaataatgcaccatatgcaataattattgaaccttccagagaattggctgaa
cagacttttaaccaaataaaaaaatttaaaaaatacctcgaagagccacaagttaaagat
ctcttagtagttggtggttttagcattaaagaccaaattgctgccttatcttcaggtgtt
gatattattgttgctacccctggccgtctggaagatcttatatctggtggccacttatct
ttatctcattgtagattttatatattggacgaagctgatggattattaaaacaacgttat
acaaaacttatagaaaatctacacgagaagatgccaaaagttgcatgcgatggtaaaaga
cttcaaatgattgtttgctctgcaacacttcatgattttgaagtaaaaaaattggcgacg
cgtctcatgcactttccaacttgggtagatcttaaaggtgaagacgctgttcctgagact
gtgcaccatgttgtggttactgttgattcccagaaagattcgtcgtggacttgtttgaaa
aatcccattccaactgatggtgtacatgacagagataatataagagcactgaatacatct
gaagctttatctcaaggagtaaagcttttaaaaggtgaatactgtattaaagctattaac
aaacacaaaatggacaaagctctcatattttgtcgtactaaacttgactgtgataattta
gaaaaatactttaaacaacttggttctttttatacttgttgtactcttcatggatcgcga
aatgttaatgaccgtagaatgaatttagaaaagtttaaaaatggcgagatcaagttctta
atttgtactgatgtagcagctcgtggcattgatgttaacgggttacctttcatgattaat
atgactttaccagatgataagacaaattatgtacatagaattggtcgtgtgggtagagca
gaacgtatgggattggccatttcatttgtagctactatcccagaaaaagtttggtatcac
ggcgaatggtgtccatccagaggacagaggtgttctaatactaatttaactactaacaaa
ggctgttgcatatggtacaatgaaccccaatatttggctgaaattgaagatcatttgaac
ataactatacctcaagttggatcagaactggatattcctatgaatgaatttgatggaaaa
gtagtttatggcaaaaaaaaagaaaataaaggaccctcttataaaaatcattatgaccaa
ctgttgtctactatcaatgaactcactcaattagaaactaaggctcaatatttgtatttg
cacatgcttaataattaa
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