Aphis gossypii (cotton aphid): 114120296
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Entry
114120296 CDS
T05869
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03030
DNA replication
ags03420
Nucleotide excision repair
ags03430
Mismatch repair
ags03440
Homologous recombination
ags03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114120296
03420 Nucleotide excision repair
114120296
03430 Mismatch repair
114120296
03440 Homologous recombination
114120296
03460 Fanconi anemia pathway
114120296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ags03000
]
114120296
03032 DNA replication proteins [BR:
ags03032
]
114120296
03400 DNA repair and recombination proteins [BR:
ags03400
]
114120296
Transcription factors [BR:
ags03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
114120296
DNA replication proteins [BR:
ags03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
114120296
DNA repair and recombination proteins [BR:
ags03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
114120296
MMR (mismatch excision repair)
114120296
DSBR (double strand breaks repair)
HR (homologous recombination)
114120296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
114120296
NCBI-ProteinID:
XP_027837964
LinkDB
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Position
2:complement(63176331..63179307)
Genome browser
AA seq
609 aa
AA seq
DB search
MEYEKMLTKGALKSIMNNEDVKDPMMQVLGVRKITAAGANERYRLLISDGQNLNSFAMLA
TQLNSMVCNGLIDEFSILKIKRHIISNLTDRSKGSKQVMILLDLAVMVPGTTVGSKIGDP
KPIIDNSGQVVENGTSASVDSTPQSNSLPKPRSVQSSVIDNGLQRDIDVSNIHPINSLSP
YQNKWTIRARVVNKAPIRTWNNQRGEGKLFSMDLLDESGEIRATAFNSECDKFFDMVEVN
KVYFITRGTIKTANKKFSNLNNDYELTLSSETQIFPCHDFDDSQMPALKFNFVPLSQVKD
VDVDGIVDVIGVCQTAGELTNLMSKTTRKEXKKRDVTIVDQSLSSVTITLWDTQAEDFDG
SLQPVIAIKGSRIREFMGSKSLSLLGSTVMQINPDIEEAHRLRGWYDSLPSNVEFNSIST
RSDAGANSQFLTIKGAQLAQLGSGDKADYYSMYSHLIFVKSESALYKACPKPDCQKKVID
RNDGTYRCEKCNDETENFKYRLMLSAQLSDSTGNQWVTMFQETAENLLGTTSAELGRLME
ESKEEYSDVFQRQMFKLFEIRARAKMETYNNETRLKVSLVNIKPINYKAASTKLIADIKR
LSGISTSVM
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggagtatgaaaaaatgttaacaaagggcgcattaaagtccattatgaacaatgaagat
gttaaagatccaatgatgcaagttctcggtgtaagaaaaataactgctgcaggagcaaat
gaaagatatcgcttactaatttctgatggtcaaaatttaaattcttttgctatgttggct
actcaattgaatagtatggtttgtaacggattaattgatgaattttctatcctaaagatt
aaacgtcatatcattagtaatttaaccgatcgttcaaaaggaagtaaacaagtcatgatc
cttctagatttggctgttatggtacccggtacaactgtaggttcaaaaattggtgatcct
aaaccaataattgataattctggtcaagtagttgaaaatggcacttctgcttcagtggac
tctacgccccagtccaattctttgccaaaacctcgttctgtccaatcaagtgttatagat
aatggtcttcaaagagatattgatgttagcaatattcatcctattaattctttaagccca
tatcaaaataaatggacaatcagagctagagttgtaaacaaagcaccaattcgtacttgg
aacaatcaaagaggtgaaggtaaactttttagtatggatctacttgatgaaagtggtgag
atacgagccactgcctttaacagcgaatgtgacaaattctttgatatggttgaagtaaat
aaagtttactttataactcgtggtacaattaaaacagcaaataaaaagttttcaaactta
aataatgattatgaacttacactttctagtgaaacacaaattttcccttgtcatgacttt
gatgattctcaaatgcctgctcttaaatttaattttgttccattgagtcaagtgaaagat
gttgatgttgatggtatagttgatgtcataggagtttgtcaaactgctggagaattgact
aatttaatgtcaaagactacaagaaaggaanttaaaaaaagagatgtgactattgttgac
caatctttaagttcagtgactattacattatgggatactcaggccgaagattttgatgga
tcattgcaacctgtaattgctataaaaggaagcagaatcagagaattcatgggtagcaaa
tcattgtcacttttaggatcaactgtaatgcaaattaatccagacattgaagaagctcat
cgcttaaggggttggtatgattcacttccttcaaatgtggaattcaatagtatttctacc
cgttctgatgctggagcaaattctcagtttcttactattaaaggagcacaacttgctcaa
cttggtagtggagataaagctgattattatagtatgtactcacatctgatttttgtgaaa
tctgaatctgccctgtataaagcatgcccaaagcctgattgtcaaaaaaaagttattgat
cgaaatgacggaacatatcgttgtgaaaagtgtaatgatgaaactgaaaactttaagtat
agattgatgctctcagcacaattgagtgactcaactggaaatcagtgggtaactatgttt
caagaaacagctgaaaatcttttgggcaccactagtgcagaattgggaagactgatggaa
gagtctaaggaagaatatagtgatgtttttcaaagacaaatgtttaaattatttgaaatt
agagctagagcaaaaatggagacatacaacaatgagactaggttaaaagtatctttagtt
aatataaaacctattaattataaggcggcttcaacaaaattgattgctgatattaaaaga
ttgagtggaatttcaacatcagtaatgtaa
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