Aphis gossypii (cotton aphid): 114120578
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Entry
114120578 CDS
T05869
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114120578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ags03041
]
114120578
Enzymes [BR:
ags01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114120578
Spliceosome [BR:
ags03041
]
Complex C
Other components
Step II factors
114120578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
T2SSE
Flavi_DEAD
PhoH
AAA_7
TssR_VWA
AAA_16
AAA_30
Microtub_bd
AAA_14
Motif
Other DBs
NCBI-GeneID:
114120578
NCBI-ProteinID:
XP_027838323
LinkDB
All DBs
Position
3:complement(11112630..11120448)
Genome browser
AA seq
1190 aa
AA seq
DB search
MSDDEDGVHKLSGYNHTEGGLIIKKKPKPAEQFEFKIPDVPKGSLLGLDKLAAQKRLERE
LEKNKKSTLHSYTDNDDEGQDIEETHLKDNLKHKNKSRHYRSAHEETPTYTGGLSKQAIE
KQERLKKSYNRGVHYSTSDSKDKRNRHRDRRSSDKSDKWHRRNEPYYKKQERSGNRDHRS
SRTPSYRSRDEPLTPNVRLRDTPSRTTWDEDEHNMSSYKSSTWDMPTPKSSIDDDPTRTP
RFTPAYKYNKWDSNRASGATPKPGKENDLLWASETDRDEWEEAQNRLDRQWYNLDEGVDE
TNNPFSDVSESYAKKKEQQLAQSKKKRMSAQQRQINKDNELWERNRMLTSGVVTSVDIDE
DFDEDNEARVHLLVHNIVPPFLDGRIVFTKQPEPVIPVKDPTSDIAIVARKGSMLVRTFR
EQKERKRAQKKHWEVAGTAIGNIMGVKKKEDDKDERIDEEGETDYKTDQQFAEHIKNTPE
ASSDFARKKTYAQQRQYLPVFAARQELLNIIRENNIVIVIGETGSGKTTQLTQYLHEEGY
SKFGMIGCTQPRRVAAMSVAKRVSDEMNTKLGDEVGYAIRFEDCTSEKTVIKYMTDGILL
RESLRDPDLDNYSAVIMDEAHERSLNTDVLFGLLREVVTRRTDLKLIVTSATMDASKFSL
FFGNVPTFNIAGRTFPVEVMFSKNPCEDYVEAAVKQALQIHLQPHEGDILIFMPGQEDIE
VTCETLAERLNEIADAPQLLVLPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIAETSLTV
DGIKFVVDTGYCKMKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCYRLYTERQY
KDDLLMGTVPEIQRTNLANTVLLLKSLGVQDLLQFHFMDPPPQDNILNSLYQLWVLGALD
NTGELTSLGRQMAEFPLDPPQCKMLIVSSLMNCTADVLIIVSMLSVPSIFYRPKGREEDS
DNVREKFQVPESDHLTMLNVYNQWKQNSYSASWCNEHFIHIKAMRKVREVRQQLKDIMVQ
QKIEIISCGTDWDIIRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGMGFTP
DYVVYHELIMTSKEYMQTVTAVDGHWLAELGPMFFTVKETGKSGSAKRQTMETLQEMEGS
MRIAQEEMKARKLEEERKQLASIRKVEIITPGKWEPGTPTLRRKQGNLGL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatgaagacggtgtacataaattgtctgggtacaatcacactgaaggcggt
ctaatcattaaaaaaaaaccaaaacctgctgaacagtttgagtttaaaatacccgacgta
cctaaaggttcgttgcttgggttggacaaattggctgctcaaaaacggttagaacgagaa
ttagaaaaaaacaagaaatcaacgttacattcctatacagacaatgacgatgaaggacaa
gacattgaagagacacatttaaaagacaatcttaaacataaaaacaaaagccgacattat
cgatcagcccacgaagaaacaccaacatatactggagggttatcaaaacaagctatagaa
aaacaagaaagattgaaaaaatcatataaccgcggtgtacattattcaacttcagattct
aaagacaagcggaatcgtcatcgcgataggaggagtagtgacaaaagtgataaatggcat
cgtagaaatgaaccatattataaaaaacaagaaagaagtggtaaccgtgatcatcgatcc
agtagaacgccatcttatagaagtagagatgaacctttaactccaaatgtcagacttcga
gatacaccatctagaactacttgggatgaagatgaacataatatgtcttcatataaatca
tctacatgggatatgccaacaccaaaatctagtattgatgacgatccaactagaacacct
agatttactccagcctataagtataataagtgggatagcaatcgtgcttcaggagctaca
cctaaaccaggaaaagaaaatgatctattatgggctagcgaaactgatcgtgatgaatgg
gaagaagcccaaaaccgtttagataggcaatggtataatttagatgaaggagttgatgaa
actaataatccatttagtgatgtcagcgaatcatatgccaaaaaaaaagaacaacaatta
gctcagagtaaaaagaaacgtatgtctgcacaacaaagacaaattaataaagacaatgaa
ctgtgggaacgtaatcgtatgttgaccagtggtgtagttacatctgttgacatagacgaa
gactttgatgaagataatgaagccagagttcatctattggtacataatattgtacctcca
tttttggatggccgtatagtattcacaaaacaacctgaacctgttataccagttaaagat
ccaacttctgacatagctatagttgccagaaaaggttctatgttggtacgaactttcagg
gaacaaaaagaacgaaaacgagcccaaaagaaacattgggaagtagcaggcactgctata
ggaaatataatgggagtaaaaaaaaaagaagacgataaagatgagcgtattgatgaagaa
ggagaaactgattataaaactgaccaacaatttgctgaacatattaaaaacacaccagaa
gcaagtagtgattttgctagaaagaagacatatgcacagcagagacagtatttgccagtg
tttgcagccagacaagagctattaaatatcatcagggagaataacattgtcatcgttatc
ggtgaaacaggtagtggtaaaacaactcaacttacgcaatacctccatgaagaaggatac
agcaagtttggcatgattggttgtactcagccaagaagagttgctgctatgtcagtggcc
aaacgtgtttcagatgaaatgaacaccaaacttggtgatgaagtaggatatgctattcgt
tttgaagattgtacttctgagaaaactgtaataaaatatatgactgatggtattttactc
cgagaatcattgagagatccagatttagataattatagtgctgtaattatggatgaagct
cacgaacgatcattgaatactgatgttctttttggtctcctaagagaagtagttactaga
cgtacagatctcaaattgatagtgacatcagctacaatggatgcttctaaattttctttg
ttttttggtaacgtaccaacatttaacattgctggtcggaccttccctgttgaagttatg
ttcagcaaaaatccttgtgaggactatgttgaagctgctgtaaaacaagcattgcaaata
catttacaacctcatgaaggtgatatattaatattcatgcctggtcaagaggatattgaa
gtaacatgtgaaacacttgctgaaagattaaatgaaatagctgatgcccctcaattatta
gtgctcccaatttattcacaattgccttcagatttacaagctaaaatatttcaaaagtct
agcgatggattacgaaaatgtgtagtagctacaaatattgcagaaacatcattaacagtt
gatggaattaaatttgttgttgatactggttattgtaaaatgaaagtttataatcctcga
attggtatggatgcattgcaaatttatcccatcagtcaagcaaatgctaatcaaagaagt
ggtagagccggtcgtacaggtcctggacaatgttaccgattatacactgaaaggcaatat
aaagatgatttgcttatgggtacagttcctgaaatccaaagaaccaatttagctaacact
gtgttattactaaaatcattgggagttcaagacttacttcagtttcattttatggacccc
cctccacaagataacattttaaattctttataccagttgtgggtactaggagcattagat
aatacaggagaattgacatctcttggacgtcaaatggctgaatttccactagatcctcct
cagtgtaagatgttaatagtatcgtcattgatgaactgtactgctgatgtactaatcatt
gtttcaatgttatctgtgccttcaattttctacagaccaaaaggtcgagaagaagattct
gacaatgttagagaaaaattccaagttcccgaatctgatcatttaactatgttgaatgtt
tataaccaatggaagcagaatagttattcagcatcatggtgtaatgaacattttattcac
attaaagccatgcgtaaggttcgtgaagtaagacaacaacttaaagacattatggttcaa
caaaaaatagaaattatatcttgtggtacagattgggacattattcgaaaatgtatatgt
tcagcttactttcaccaagcagcaagattaaaaggaattggtgaatatgtaaattgccgt
actggcatgccttgtcatttgcatcccacatcagctctttttggcatgggtttcactcct
gactatgttgtatatcatgaacttataatgacttcaaaggaatacatgcaaactgtaact
gctgtggatggccactggttggctgagttgggtcctatgttctttactgttaaggaaaca
ggcaaatcaggttcagcaaaacgacaaaccatggaaacattacaagaaatggaaggttct
atgagaatagcacaagaggaaatgaaagcaagaaagcttgaagaagagcgtaaacaattg
gccagcatcagaaaagtggaaatcattacgccaggtaaatgggaacctggtaccccaaca
cttcgtcgcaaacaaggaaatctggggttataa
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integrated database retrieval system
