Aphis gossypii (cotton aphid): 114120624
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Entry
114120624 CDS
T05869
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114120624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ags03041
]
114120624
Enzymes [BR:
ags01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114120624
Spliceosome [BR:
ags03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114120624
Complex C
U4/U6.U5 tri-SnRNP related factors
114120624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
Flavi_DEAD
T2SSE
AAA_30
nSTAND3
Cas3-like_C_2
TsaE
SRP54
Motif
Other DBs
NCBI-GeneID:
114120624
NCBI-ProteinID:
XP_050063993
LinkDB
All DBs
Position
X:29272576..29277831
Genome browser
AA seq
871 aa
AA seq
DB search
MGSSDSDEDRRERDKFAERLRKKDKDRTRNIAIPRSDKKSYEEAAKRLKLENEREKEMVI
PRLRIESRRKYLEKRKDDKVTELEADIIDDEYLFDKEDLSQREIFDREHKKKLLSLAKEH
EKARELENVQRYRMPQDIKDDQMEYEMEVDKAPITEQQKWEEEQMSSAVYKFGAKRKEKE
QYELLIDNQIEFIQTANLPGTHDEEKSEITEKQKKKLSIEETKKSLPIYKFKKDLIRAIK
DHQILIIEGETGSGKTTQIPQYLHEAGFTENNKIIGCTQPRRVAAMSVAARVAEEMSVKL
GNEVGYSIRFEDCTSERTIIKYMTDGTLHREFLSEPDLQSYSVMIVDEAHERTLHTDILF
GLVKDVIRFRPDLKLLISSATLDAQKFSEFFDDAPIFRIPGRRFPVDIYYTKAPEADYID
ACVVSILQIHVTQPLGDILVFLTGQEEIETCHELLQERVRRLGSQIKELILLPVYSNLPT
EMQAKIFEPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLIVVP
ISKASANQRAGRAGRVAAGKCFRLYTSWAYKSELEDNTVPEIQRINLGNAVLMLKALGIH
DLIHFDFLDPPPHETLVLALEQLYALGALNHKGELTKLGRRMAEFPLDPMMAKMLLASEK
YKCSEEIASIAAMLNVNSAIFYRPKDKLILADTARKNFFSQGGDHLALLNIYNQWANTDF
STNWCYENYIQHRSMRRARDVRDQLVGLMQRVEMEIVSNPTETVNIRKAITAGYFYHIAR
LSKGHYRTVKHNQTVIIHPNSSLFEELPRWVLYHELVLTTKEYMRQVTEIDSKWLREVAP
HYYQDRELEDSTNKKVPRTLGKTSSQLKMNN
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgggttctagtgacagcgacgaggatcgcagagagcgggataagtttgccgaaaggcta
agaaaaaaagacaaagacagaactcgtaatattgctattcctagatcagacaaaaagtct
tatgaagaagcagcaaaacgattaaaattagaaaatgaacgtgagaaagaaatggttatt
cctcgacttcgtattgagtctcgtcgtaaatatctcgaaaaaagaaaagatgataaggtt
accgaacttgaagctgatatcattgatgatgaatatttatttgataaagaagatttatcg
caacgtgaaatttttgaccgtgaacacaaaaagaagttattaagtcttgcaaaagaacat
gaaaaagctagagaacttgaaaatgtccaacgttatcggatgcctcaagatatcaaagat
gaccaaatggagtatgaaatggaagtggataaagcaccaattactgaacagcaaaaatgg
gaagaagaacaaatgtcttctgctgtttataaatttggtgctaaaagaaaagaaaaagaa
caatacgaattattgattgataatcaaatagaatttattcaaactgcaaatttacctggc
acacatgatgaggaaaagtctgaaattactgaaaaacaaaagaaaaaactcagcatagaa
gagacaaaaaagagtttgcctatatataaattcaaaaaagatctgataagagctattaaa
gaccatcaaatacttatcatagaaggtgaaactggttctggtaagactacacaaatacct
caatatctacatgaagcaggtttcactgaaaataacaaaataattggatgtacccaaccc
agaagagtagctgctatgtcggttgcagctcgtgtagccgaggaaatgtctgttaaactt
ggaaatgaagttggttatagtatacgttttgaagattgcacttcagagcgtactataata
aaatacatgactgatggaacattgcatagagagtttttgtctgaaccagatttacagtcg
tacagtgtgatgattgtagatgaagctcatgaacgtactcttcacactgatattttattt
ggtttagtaaaagatgttataagatttagacctgatttgaaattattaatatcaagtgcc
actttagatgctcagaagttttctgaattctttgacgacgcacctatatttagaatacct
ggaagacgtttccctgtggatatatattatacaaaagcgcccgaggcagattatattgac
gcgtgtgttgtatctatattgcagatacatgtaacacaacctcttggagacatattagtc
tttctaactggtcaagaagagattgagacttgtcatgaactattacaagagcgagtccgt
agacttggctctcaaatcaaagaactgattttattaccagtttatagtaatttacctact
gagatgcaagccaaaatttttgagcctacacctcccaatgctagaaaagttgttttggcc
actaatatagcagaaacttcattaacaattgacaatattatttatgttattgatccagga
ttttgtaaacaaaataattttaattcacgtacaggcatggaatctttaatagttgtacca
atatcaaaggcaagtgctaatcaaagagctgggagagctggtcgagtagctgctggtaaa
tgttttcgcttatatacatcatgggcttataaaagtgaacttgaagacaatacagttcca
gaaattcaaagaattaatttaggtaatgctgtgttgatgttgaaggctcttggtattcat
gacttgatacattttgatttcttagacccccctcctcatgaaacattggtacttgcactt
gaacaactttatgcattaggtgcattgaaccacaaaggtgaattaaccaaattgggacgt
cgtatggctgaatttccattagacccaatgatggcaaaaatgcttttggcttctgagaag
tataaatgttcagaagaaattgcttctatagcagcaatgttgaatgtaaatagtgctata
ttttatagacccaaagataaattaattttagctgatacagctcgcaaaaattttttttca
caaggtggtgatcatttagccttattaaacatttataaccaatgggctaatacagatttt
agtacaaattggtgttatgaaaattatattcaacatagatcaatgcgtagagctcgagat
gttagagatcaattagttggtttaatgcaacgtgttgagatggaaatagtttcaaatcca
actgaaactgtaaatattcgaaaagccataactgctggttatttttatcatattgcaagg
ctgtcaaaaggtcattatcgtactgttaaacataatcaaactgttattattcatccaaat
agcagtttatttgaagagcttccaagatgggttctatatcatgaattagtattaacaact
aaagaatatatgagacaagtcacggagattgatagtaaatggctacgtgaagtagctcct
cattactatcaagacagagaacttgaagactctactaataaaaaagtacctaggacatta
ggaaaaacaagttctcaactaaaaatgaataattga
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