Aphis gossypii (cotton aphid): 114120686
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Entry
114120686 CDS
T05869
Name
(RefSeq) LOW QUALITY PROTEIN: protein HBS1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114120686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114120686
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114120686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
HBS1_N
SRPRB
AAA_22
nSTAND3
DO-GTPase2
GTP_EFTU_D4
AAA_27
Motif
Other DBs
NCBI-GeneID:
114120686
NCBI-ProteinID:
XP_050057830
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Position
2:45181690..45186197
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AA seq
640 aa
AA seq
DB search
MARHRNVRTTQFSDDEYYDDDDDYYSHSFEDDCISPSDAIYLINHKSKFDSDQDLTDAKV
NSCLQKITEVLGFELAKDVVAGHLINNEFDIDKTVDQIINSKIGATKVKDQQPAEGRLSR
PPSVVIASSSKNKDNIIVGFGNTSISGSKNKNLIATPKQTPFSTPICSPAATPXNRSPQN
ARLGSPRVDRKLNSPKSNKVRDDQELLTSNHKDQLYLIIIGHVDAGKSTLMGHLLYKLGH
VQQRTIQKYEHESKKLGKQSFFFAWVLDETAEERNRGITMDVGHLKFETKTKDVTLLDAP
GHKDFIPNMITGASQADATILVVDATKGEFETGFDSGGQTREHALLIRSLGITQLGVAVN
KMDTVNWSEERFEEIKTKLGLFLKQAGYKESDVTFVPCSGLSGENLATKANESLLTNWYN
GPCLMDVIDSFKPPERAISKPLRLCISDVFKSSGSGFSIVGRVETGQIRVGDKVLVQPQG
EVAQIKSIEIDELPQPIGLAGDFISVSLTGYDAQTIYSGCVLSDISLPIPVTSVIEARVV
VFNVDFPIVRGHQVVLHYQSACESAVISRLLAELNKSTGEVIKKNPRIIKKNTHALIKIN
LSRPICVEVYSDIRQLGRVMLRSGGTTIAAGLVTKVNFNK
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccacaggaacgtacggaccacgcaattttccgacgatgaatattatgacgat
gatgatgattattattcacattcatttgaagatgactgtatttctccaagtgatgcaatt
tatttaattaatcacaaatccaagtttgactcggatcaagacttaactgatgccaaagta
aactcatgtttacaaaaaataacagaagttttgggatttgaacttgccaaggatgttgta
gcagggcatttgattaataatgaatttgatattgataaaactgttgatcaaataataaat
tcaaaaattggtgctacaaaagtaaaggatcaacaaccagctgaaggacggttaagtagg
cctccttctgttgttattgcttcctcatcaaaaaataaagataacattattgttggtttt
ggaaatacatcaatttcaggttcaaaaaataagaacctaattgccacacctaaacaaaca
ccttttagtacacctatatgctcacctgcagcaacacccngcaatcgatctcctcaaaat
gctcgtttaggatcaccacgtgtagatcgcaaattaaattcacccaagagtaacaaagtt
agagatgatcaagaattattaacgtccaatcacaaagatcaactttatttaattataata
ggtcatgtcgatgcaggaaaaagcactttaatgggacatttgctatataaattaggacat
gtacagcagcgaaccatacaaaagtatgagcacgaaagcaaaaagttgggtaaacagagt
tttttctttgcttgggtattggacgaaactgctgaagaaagaaatcgtggtattacaatg
gacgtaggtcatttgaagtttgaaacaaaaactaaagatgtcactttgctagacgcacct
ggtcataaagattttataccaaatatgataacaggtgcatctcaagctgatgcaactatt
ttagttgttgatgcaactaaaggagaatttgaaactggatttgatagtggagggcaaaca
cgagagcatgcccttttaatacggtctctaggaataactcaacttggagttgctgtaaac
aaaatggatactgtcaactggtctgaagaacgatttgaggagatcaaaacaaaacttgga
ctgtttttgaaacaggctggttacaaagaatctgatgttacgtttgtaccatgctctgga
ttaagcggtgaaaatcttgccacaaaagcaaatgaatcactattaaccaattggtataat
ggtccttgtttaatggatgtcattgattcatttaaaccaccagagcgggcaatttctaaa
ccattgagattatgtattagtgatgttttcaaaagttcgggatcagggttttcaattgtt
gggagagtcgaaacaggacagattagagttggtgataaagttttggtacaacctcaggga
gaagtcgcacaaattaaaagtattgaaatagacgaattaccacagccaatcggattagct
ggggactttatcagtgtttcgcttactggttatgatgcacaaactatttactctggttgt
gttttgagtgacatttcacttccaataccagtaacatctgtaatagaagcacgagtggtt
gtatttaatgtggactttcctattgttcgtgggcatcaggttgtattgcactatcaaagt
gcatgtgaatcagcagtaatcagtagacttttagcagagttaaataaaagtactggtgaa
gtcatcaagaaaaatcctcgcataataaagaaaaatactcatgctcttatcaaaataaat
ttatcgaggccaatttgtgtagaggtatattcagacatcagacaattgggtagagtgatg
ttacggtctggtggtactactatagcagctggtcttgttactaaagtcaattttaataaa
taa
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