Aphis gossypii (cotton aphid): 114121822
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Entry
114121822 CDS
T05869
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114121822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114121822
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114121822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_12
TPR_14
TPR_2
ARM_TT21
ARM_TT21_N
TPR_1
TPR_4
TPR_30
ANAPC8
Motif
Other DBs
NCBI-GeneID:
114121822
NCBI-ProteinID:
XP_027840103
LinkDB
All DBs
Position
2:52033650..52037082
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AA seq
650 aa
AA seq
DB search
MSDKQEPNGKASATNITDQERDLAQQALAEYEKKNYKSCLEHLQRIEETRPNDPKVLLNK
AIVEFYESGLCTADKFQKSFIDVCKQVELNLEQLDSLEDVENCIYYYNYAVFLYHLKHYT
KALAMINKVYSFIESLEESLAHKVCLLIVQLHIDTNKHAEALKLITYIESQFVSTDNATN
ILTGSADQGGPIHAETEKTEKKANLDAATDAFRVSLIQYRVRSLMELNLFDECSQQLNTI
KEKQDSITMFLIGKLEYLRGNHKEALAILKEIPVKDDFIETGECSSVLINNNVACLYHYA
KKPTLSFTSIYKAIVQHQKNIVDVTKPTQAEGSLSGQPLHIIGASIKTELMFNLGISLLH
ARKPEEAFDCLIEAVQTYHMNPRLWLRLAECCIMTHKKSNDRDFDFKKPYIEGVVGSGKH
RKIILKSQLFPDTKYSCEAVSASIPMPSLEFGSLCIRNAVLLIQNDTIDCSPSHTPINTP
HKDYLFGCIQSAGAYIALCLGDPVVALKYSQELLKSDKINKVHKFLGHLYAAEALILSDK
PNEAIDMLKESNAFDDIEPEIHEQLRTEQWKPDKQKSAKAVLYYNLAVALTLRGDLDKAG
ELLKQIWLSKIEHVSVPVHVVILALYIHLRLGQKEIAITLIKQNCPQAKR
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaaacaggaaccgaacggcaaagcgtccgctaccaatataacagaccaagaa
cgcgatttggctcaacaagcattggccgaatatgaaaaaaaaaattacaaatcttgctta
gaacatctgcaacgaattgaagaaacgaggcccaatgaccccaaagtactactcaataaa
gccatcgttgaattctatgaaagcggtctgtgtactgccgacaaatttcaaaagtcgttt
atagatgtctgtaaacaggtggaattaaatctagaacagttggattctttagaagacgtt
gaaaactgcatttactattataactatgctgtgtttttataccacttaaaacattacacc
aaagcactggctatgataaacaaagtttactcatttatagaatctctagaggaaagtttg
gctcataaagtatgcttgctgatagtccaattacatatagatactaataaacatgcagaa
gcactgaaattgattacttacattgaaagtcaatttgtatcaacagataatgccactaac
atattaactggtagtgcagatcaaggaggtcctattcatgccgaaacagagaaaacagaa
aaaaaagccaatttagatgctgctactgatgcatttcgagtcagtcttattcagtatcga
gttaggtctcttatggagctaaatttatttgatgaatgtagtcaacaattaaatacaatc
aaagaaaaacaagactctattacaatgtttttaataggaaaattagaataccttcgtggg
aatcataaagaagcacttgcaattttgaaagaaattcctgtaaaagacgattttatagaa
actggagaatgttcttcagttttaataaataataatgtggcttgtttgtaccattatgct
aaaaaacctaccttatcattcacatctatttacaaagcaattgtccaacaccaaaaaaat
attgttgatgttacaaagcctactcaagctgaaggtagtttatcaggtcaaccacttcat
ataattggtgcaagtattaaaactgaacttatgttcaatttgggcataagtttattacac
gctcgaaaacctgaagaagcatttgactgtctaatagaagctgtacaaacttatcacatg
aatcctaggctttggttaagattagcagaatgttgtattatgactcataaaaaaagcaat
gacagagattttgatttcaagaaaccttatattgaaggtgtggttggctctggtaagcac
aggaaaatcattttgaagtcacagttgtttccagacacaaaatacagttgtgaagcagtt
tctgcatccattccaatgccaagtcttgaatttggctcattatgtattcgtaatgctgtt
ttattaattcaaaatgatactattgactgttcaccttctcacactcccattaatacacca
cacaaagactatcttttcggttgcattcaatcagctggagcatatatagccttatgtcta
ggagatccagtggttgcattgaagtattcacaagagttacttaagtctgacaaaattaac
aaagttcataaatttttaggtcatttatatgcagccgaagcactaatattgtcagataaa
ccaaatgaagcaatagatatgttaaaagaatccaatgcttttgatgatattgaacctgaa
atacatgaacagcttagaactgaacaatggaaaccagacaaacagaaatctgccaaggct
gttctttattataacttagctgtagcattaacactaaggggtgaccttgataaagctgga
gaattacttaaacaaatatggctatcgaaaatcgaacatgtttcagtacctgttcacgtt
gtcatattggccctatacattcacttacgattaggccaaaaagaaattgcaataacctta
ataaaacaaaattgtccgcaagcaaaacgataa
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