Aphis gossypii (cotton aphid): 114123313
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Entry
114123313 CDS
T05869
Name
(RefSeq) exosome component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114123313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114123313
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
114123313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Cellulase
Herpes_UL20
Motif
Other DBs
NCBI-GeneID:
114123313
NCBI-ProteinID:
XP_027842044
LinkDB
All DBs
Position
3:complement(12722079..12727161)
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AA seq
746 aa
AA seq
DB search
MSDFKTVIEGTRASNNLPNGVNWNFYYSYPKFKKTVSSRQHHVLKLISALLKNQKIPGNI
RDKDEDHQFELIEEGNDTILDRVTHNIDTLNGSFKNVGVSVIPKAFVSETTDNTQAANKK
RILVHGRNIERPQLKFKTKVDNRPVPFKPLLTSKPNSKIPLDLCLETNEDGIMFYKHPYQ
LELEEFKVPDEHLKISKAVKPASLEDTKFVEVYTEEQLNLMISDLKNVNELAVDLEAHSY
RTYQGFTCLMQISTRNADYIIDTLHLREKLHILNEIFTNPAVVKVFHGADSDIPWLQRDL
GLYVVNMFDTYQAAKILNFSRKGLDFLLKHYCNVDADKAFQLYDWRTRPLSTEAIFYARS
DTHYLLYVYDMIKKDLMAMSTNQCNYIELVFQRSADVCKTRYEVNILSEDSHLSMYKRSK
KMFDIQQMYALKHIYAWRDKLARELDESPGYILPNHMLLKISEMLPKESFGILACCSPIP
PLVRQCLHEIHYIVKKAREQTFENQAEKLNEDNSFTQDVVKHIDVDMISLHDYSKSKENA
EDSLPTLLNDLNKLPDDEIEILCFTPQEITIFQEVNKKKSKKHIGLTNIVYKQPYELYLK
TIKYNNVLKKSLEVQEKNSGNNEPLNTSVPMECPDKLYLTTQVKEIKKEIIDHTNVKKNV
PKVLNAPNTIIREIKVDNQSSSTSSTSQNPTNNSRQNSFKPHKYETTDFAKFHNQSKEVM
LIAKRLQKKKNKTKKNKKPKRLQKTV
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattttaaaacagttattgaaggcactcgagcctctaacaatttgccaaatgga
gtaaattggaatttttattacagttaccctaaatttaaaaaaactgtttcatcacgtcaa
catcatgttctcaagttaatatctgcattattgaaaaatcaaaaaatcccgggtaatatt
cgagataaagatgaagatcatcaatttgaacttattgaagaaggaaatgacacaatctta
gaccgagtgacacataatattgatacattaaatgggtctttcaagaatgtgggtgtatct
gttatccctaaagcttttgtatcagaaactactgacaatacacaagcagcaaacaaaaaa
agaatattagtacatggacgtaatattgaaagaccacaattaaaatttaagaccaaagtc
gataatagaccagttccgtttaaaccccttcttactagtaaaccaaacagtaaaatacca
ttagatttatgtttagaaactaatgaagatggaatcatgttttataaacatccatatcaa
ttagaattagaagaattcaaggttccagatgaacacttaaaaatctcaaaagctgtcaag
cctgcatcactagaagatacaaaatttgttgaagtatatactgaagaacaattaaattta
atgatttcagatttaaaaaacgtcaatgaattagctgttgatttagaggctcatagttat
cgaacatatcaagggtttacttgcttaatgcaaatatctactagaaatgcagactatatt
atagatacactacatcttcgtgaaaaattgcacatactcaatgaaatattcactaatcct
gctgtagttaaagtatttcatggagctgatagtgatattccttggctgcaaagagatctg
ggtctatatgttgtcaatatgtttgatacgtatcaagctgccaaaatattgaacttttct
agaaaagggttagatttcttactaaaacattattgtaatgtagatgctgacaaagcattt
caactgtatgattggagaactaggcctttatcgactgaagccatattttacgcccgtagt
gatactcactatttactctatgtgtatgatatgatcaaaaaagatttaatggcaatgtct
actaaccagtgcaactacattgaattagtatttcagcgaagtgctgatgtgtgcaaaacg
aggtatgaagtgaatattttaagcgaagacagtcacttgagtatgtataagcgcagtaaa
aaaatgtttgacatccagcaaatgtatgcactcaaacatatatacgcttggagagataaa
ttagctagagaattagatgaaagtccaggatatattctaccgaatcatatgttgcttaag
atatcagaaatgttgcccaaagaatcatttggcatattggcttgttgttcgcctatacct
ccattggtacgacaatgtctccatgaaatccattacatcgttaaaaaagcaagggaacaa
acttttgaaaatcaggccgagaaattaaatgaggataatagttttacacaagatgtggtc
aagcatatagatgttgacatgattagcttacatgattattctaaatcaaaagagaatgca
gaagactcattgcctacattattaaatgatttaaataaattacctgatgatgaaattgaa
attctatgttttacgccacaggaaatcactatattccaagaagtgaacaaaaaaaaatca
aagaagcatattggtttaacaaatattgtatataaacagccgtatgagctgtatttgaaa
acaattaagtataataatgttcttaaaaaatcactagaggtgcaagagaaaaacagcggt
aacaatgaaccattaaatactagtgtcccaatggaatgtccagacaaactttatttaaca
actcaagttaaagaaattaaaaaagaaattattgaccatacaaatgtaaaaaagaatgtt
ccaaaagttctaaatgctccaaatacaattataagagagataaaagttgataaccaaagt
tctagtacaagttcaacttcccaaaaccctacaaataattcaagacaaaacagttttaaa
cctcataagtatgaaacaactgattttgccaaatttcataatcaatcaaaagaggttatg
ttaattgctaaacgattgcaaaagaaaaagaataaaacaaagaagaataaaaaacccaag
agattgcaaaaaactgtataa
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