Aphis gossypii (cotton aphid): 114123555
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Entry
114123555 CDS
T05869
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ags
Aphis gossypii (cotton aphid)
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ags03021
]
114123555
03041 Spliceosome [BR:
ags03041
]
114123555
Transcription machinery [BR:
ags03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114123555
Spliceosome [BR:
ags03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
114123555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
114123555
NCBI-ProteinID:
XP_027842371
LinkDB
All DBs
Position
1:9023962..9034432
Genome browser
AA seq
1532 aa
AA seq
DB search
MEAVKAFTFELYSIMDMKPPISKAKMTAITRNAIKAIKLYKHVVQCVEKFIQKCKPEYKI
PGLYVIDSIVRQSRHQFGNDKDVFAPRFARNLKLTFTHLFACPEEDKSKVIRVLNLWQKN
AVFTTDIIQPIFDLAANPDFGEHSQMNPLTSMDNSPKLSVKTDLFKIQDNTQVKDDTSKN
FDNLQSTDIENKQIDPAILEHIQAIQSLLKKQPSHLQQLSTSPQVKKSDTVKLFDKKILD
YDYGDDEDEMLNQSPVFQQQQHQSATIDGIDSLLNNPEVLRTLRNVEGLMSTQSKQLAEL
DKLKEMRKEAEFDKHLAQTVQNLPFASECELKPAPVVSQAVGMMSNPYVNQLFSTQMYQQ
QQPLMSLESHHKPLTQIISYDDPNQSKQPEVIDLDHIASPPQNKRDSRRDGYSLGPSRKR
SPRKSSRERQREREKEREKDRERRKKYLPPFKKNHLAVVSTTLWVGHLSKLIHQDDLYGL
FQPIGDIVSLNLISPRGCAFLCMNRRQDAARIMSKYQGERLQGKPMTIAWAPGQAMKDKE
WKDYWEIDDGVSYIPWEKLNKDIDYDELEVGGMLDEDTMPEWLKTHLKNLRTSKKNEKKE
EEKLSEGIQQPLNTSNYFDPQGVQSPSIQNMQMSPAQNNQPNQINFNMPQTMSMPNPFGI
NPRLINPMMNPMMPGTMAPMGMGHPSMMMMNRMPSPFGPPPNMPIMGNPQQMAMSNDAQK
PLGVPPDMMMSFPFGMNLPSQTAAISSGQTMMGINPPTVTSGTSTAPTLSQNTSHKDSLN
TSNPPPNQLDPSTLMQFNLPPPPTLPNLSDFARITSNSNIGNNKYDPNTLGNSEPEDSKD
SDRNIERDDRIHGLDHRNRSYDNRERIDRFTDRDIKNDRGRRDDLSQRQDPRNRIKGPEQ
RERKSSRWGDKVNEEVDNPNNIDRLSVKEGLGITQIPNIPQLDNVKDILIPNNSLHQILD
HVMQDNMGNPPFQPGMFGPNNGPLPNQMFNMPPQNFPQDGPRPPLMDNGNMRGRGGWNRG
GRGGFRGRGGYNPPNWDNNNGPPNWDTNSGPNWDNNGPPPVWQNQNMNRGGMMGRGNLRP
PLMQNVMGRGRDNWVDNNLPANRGSRDSDNWVGRGSGRDSDKWGSRGGGRDSDGWGGRGR
LSPWRGNGNRRRNEDWEGPNQQKRWRRDDNPEWDEQQKPWKRGTMNEEEERQNNKQGSQW
AASKLKNRDNNDERSKKPSKWGDKESDDNTKEDQWNKKSTEHTSSIDETNVEESPHQTSA
PMDLDNYEGEGVDNIEQLQKNQEQEQETVISNMTFKQHDEIENKEDQKETQEHHELSVYA
DSNNEDKNIEQNNEEQLNKNQPFGDYQNDFTNNSQELFHDNIKETQQNSQKISVINFEQQ
HLETKLQDDYQSHEEYQNDSNDNFNSQQENEIRQTNEEFEQNVQFKSDYSSMKDENDQPN
NHQSFNEESFNNLNNEECSVNAIVSQVDKTNKDMNIEEKSCAPRDDFYFGGDSESSMNIE
QQNNEILPIEETVNISTDNEMNDINATELNQS
NT seq
4599 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtcaaagcgtttacgtttgagctttattccatcatggatatgaagccgcca
atatcaaaagcaaaaatgactgcaattactcgaaatgcaattaaagctattaaattatat
aaacatgttgttcaatgtgtagaaaaatttatacaaaagtgcaaacctgagtataagatt
ccaggtttatatgtaattgattcaattgtaaggcaatcacgtcatcaatttggaaatgac
aaagatgtatttgcccctagatttgcacgtaatctcaaattgacttttactcacttattt
gcttgtccagaagaagataaaagtaaagttattcgagtattaaatttatggcaaaagaat
gctgtttttaccacagatattattcaacctatttttgatttggctgccaatcctgatttt
ggagaacattctcaaatgaatcctttaacatctatggacaatagcccaaaactaagtgtc
aagacagatctttttaaaattcaagataatactcaagttaaagatgatacttctaaaaat
tttgacaatttacaaagcacagacatagaaaataaacaaatagatccagctatacttgag
cacatacaggctattcaatcattgttgaaaaaacaaccaagtcatttgcaacagttatct
acatctcctcaagttaaaaaatctgatacagtgaaattgtttgataaaaaaattcttgat
tatgattatggtgatgacgaagatgaaatgcttaatcaatctccagtattccaacaacag
caacatcaaagtgctaccattgacggaattgacagcctattgaataacccagaagttctg
cgcacattgcgcaatgtcgaagggttaatgtctacacagtctaaacagctagcagagttg
gacaagttaaaagaaatgagaaaagaagcggagttcgacaagcatcttgctcagactgtt
cagaatttaccatttgcttctgagtgtgaattaaaaccagctcctgtagtctctcaagcg
gttggaatgatgtcaaacccatatgtaaatcaattatttagtacacaaatgtaccaacaa
caacaacctttgatgtcattagaatctcaccataaacctttaactcagataattagttat
gatgatccgaaccagtcaaaacaacctgaagtgatagatctagatcatattgcatcacct
ccccaaaataagcgagatagtagacgagatggttattcattaggtccatcacgtaaacga
tcgcctagaaagagtagtcgtgaacgtcaacgagaacgagaaaaggaacgtgaaaaagat
agagaaaggagaaaaaaatatttgcctccatttaaaaaaaatcatttagcagttgtaagc
actactctttgggtgggtcatttatcaaaactcatacaccaagacgatttatatggatta
tttcaaccaattggtgatatagtttcattaaatttaatatcacctagaggatgtgctttt
ttgtgtatgaaccgaaggcaagatgctgctcgtataatgagtaaatatcaaggagaaaga
ttacaaggaaaacctatgacgattgcttgggctccgggtcaagcaatgaaagataaagaa
tggaaagattattgggaaattgatgatggagtttcatacataccttgggagaaattaaac
aaggatatagactatgatgaactggaagttggaggaatgttggatgaagatacaatgcct
gaatggcttaaaactcacttaaagaacttacgaacatctaaaaaaaatgagaaaaaagaa
gaagaaaaattatctgagggaattcagcagccactaaatacatccaattattttgatcca
caaggtgttcaatctcccagcattcaaaacatgcaaatgtcccccgctcaaaataatcag
cccaatcagataaatttcaatatgccacagacaatgagcatgcctaatccgtttggaata
aatcctagattaattaatccaatgatgaatcccatgatgcctggcactatggctccaatg
gggatgggtcacccttctatgatgatgatgaatagaatgccatcgccatttggacctcca
ccaaatatgcccataatgggaaatcctcaacaaatggcaatgtctaatgatgcacaaaaa
ccacttggtgtacctccagatatgatgatgtcttttccttttggcatgaatctaccatcc
caaactgctgctatttcttctggtcagacaatgatgggtataaatccacctactgtcaca
tctggaactagtactgctcctacgctttctcaaaacacaagtcataaagatagtcttaac
acatcaaatcctcctccaaatcagttagatccttcaacccttatgcaattcaatttacct
cctcccccaacacttccaaatttatctgattttgcacgaattacaagtaacagtaatata
ggcaataataaatatgatcctaatacattaggtaactctgagcctgaagattctaaagac
tctgatagaaatattgaacgagatgatagaattcatggactagatcatagaaatcgtagt
tacgataatagggaaagaattgatagatttacagatagagatataaaaaacgatcgtgga
cgaagagacgatttatctcaaagacaagatccgagaaatcgtataaaagggcctgaacaa
agagaaagaaaatcatcacgctggggtgataaagttaacgaagaagtagacaatccaaat
aatattgatcgattgtcagtaaaagaaggattgggaataacccaaattccaaatatacca
caactagataatgtaaaagatatattgattccaaataattctttgcatcaaatccttgat
catgtaatgcaagataacatgggtaatcctccatttcaacctggcatgtttgggcctaac
aatggaccacttccaaatcaaatgttcaatatgccccctcaaaatttcccacaagatggt
cctagaccacctcttatggacaatggtaatatgaggggacgaggaggatggaatcgtgga
ggccgtggaggatttagaggacgtggaggatacaacccaccaaactgggataataacaat
ggtccacctaattgggatacaaacagtggacctaattgggataataatggaccacctcct
gtttggcagaatcaaaatatgaatagaggaggtatgatgggaagaggtaatttaagacca
ccattaatgcagaatgtaatgggccgtggccgagataattgggtagacaataatttacct
gctaatagaggcagtcgtgattcagataattgggtcggtcgtggaagtggacgtgattca
gataaatggggaagtcggggaggtggtcgtgattctgatggatggggtggtcgtggtaga
ctttctccttggagaggaaatggtaatcggcgacgaaatgaagattgggaaggacctaat
caacaaaaacgttggagacgtgatgataatcctgaatgggatgaacaacagaaaccatgg
aaacgtggaacgatgaatgaagaagaagaaagacaaaacaataaacaaggatcacagtgg
gctgctagtaagttaaaaaatcgtgataacaatgatgaacgatctaaaaaaccaagcaaa
tggggtgataaagagtctgacgataatactaaagaagatcaatggaacaaaaaatctaca
gaacatacttcatctattgatgaaactaatgtagaagaaagtccacatcaaacaagtgct
ccaatggatttagacaactatgaaggtgaaggtgttgataatattgagcaattacaaaaa
aatcaagaacaagaacaagaaactgtaatttcaaacatgacatttaaacagcatgatgaa
attgaaaataaggaagatcaaaaggagactcaggaacatcatgaattgagtgtttatgcc
gattcaaataatgaagacaaaaatattgaacaaaacaatgaagagcaacttaataaaaat
caaccatttggagattatcaaaacgattttaccaataactcacaagaattattccatgac
aatattaaagaaacacagcagaattcacaaaaaatatctgtaattaactttgaacagcaa
catttagaaacaaaactgcaagatgattatcaatcacacgaagaatatcaaaatgattct
aacgacaattttaattctcaacaagaaaatgaaataagacaaactaatgaagaatttgaa
caaaatgtacaatttaaatccgattatagtagtatgaaagatgaaaatgaccaacctaat
aatcaccaatcttttaatgaagaatctttcaacaatttaaataatgaagagtgttcagtc
aatgctattgtgtctcaagtagataagactaataaagacatgaatatagaagaaaaatct
tgtgcacctcgtgatgacttttattttgggggagatagtgaatcatcaatgaatatagaa
caacagaataatgagattcttccaattgaagaaacagtaaatatttcaacagataatgaa
atgaatgatattaatgcaacagaattaaatcaaagttaa
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integrated database retrieval system
