Aphis gossypii (cotton aphid): 114123884
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Entry
114123884 CDS
T05869
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114123884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ags03041
]
114123884
Spliceosome [BR:
ags03041
]
Complex C
Other components
Step II factors
114123884
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_LRRK2
Beta-prop_Vps41
WD_LRWD1
NBCH_WD40
PQQ_2
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
114123884
NCBI-ProteinID:
XP_027842820
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Position
3:16246447..16251195
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AA seq
562 aa
AA seq
DB search
MLNLKEYGSSSDEEDPSQNTSPETPFDDSISVLKLNEKFAVNAAPNVLPPGPDTSVQYLD
VGTKEITRNMKYEELFTPVAGPENPFLTQQQKAPKNMMTGFVEKAHINDFMFETQRRTFH
SYGYALDPTVDSTEIIGRKPDDSDEFKTVFESVPKRPADKRKRHKNDNPEDIDGYLGPWG
CYVDEQKISKPEGEDAIAIEEFLAKKHKRGKKVEDKSFKEKSILHIKDPVDYQGRSFLHI
PQDVGVNLKSNAPPDRCFLPKAHIHTWQGHTKGISAIRWFPRSAHLLMSCSMDCRVKLWD
VYRDRKCIRTYIGHTQAVRDTCFNNKGTKFLSAAYDRYVKLWDTETGDCIKSFTNHKVLY
CVKFNPEEEKQHLFVAGTADKKIVCWDTRSGNIVQEYERHLGAVNSITFVDENRRFVTTS
DDKSLRVWEWDIPVDMKYIADPTMHSMPSVTIAPNKKWLACQSMDNKIVIFSAMNRFKVN
RKKSFSGHMVAGYACSLDFSPDMSYLVSGDADGKVFIWDWKTSRLYTKWKAHDNVCIAAL
WHPHEPSKVATAGWDGLIKYWD
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgttgaatttaaaagaatatggtagtagtagtgacgaagaagatccatcgcaaaatacg
tctccagaaacaccttttgatgattcaattagtgttcttaaattaaatgaaaagtttgca
gtaaatgcagctccaaatgttttaccacctgggccagatacatcagttcagtatcttgat
gtcggaacaaaagaaatcactcgaaatatgaaatatgaagagctttttacaccagttgca
ggaccagaaaatcctttcttaacacaacaacaaaaagcacctaaaaacatgatgactgga
tttgttgaaaaagcacatattaatgatttcatgtttgaaactcaaagaagaacatttcat
agttatggttatgctctggatcctacagttgattctactgaaattattggtcgtaagcct
gatgattctgatgaatttaaaacagtttttgaatctgtgccgaaaaggccagctgataaa
agaaaacgtcataaaaatgacaacccagaagatattgatggttatctaggaccttgggga
tgttatgttgatgaacagaaaatatctaaaccagaaggagaagatgcaattgctattgaa
gaattccttgcaaaaaaacataaacgaggcaaaaaagttgaagataaaagcttcaaagaa
aaatcaattctgcatattaaagatcctgttgattatcaaggacgttcatttttacatatt
ccacaagatgttggcgttaatcttaaatcaaatgcacctcctgatagatgtttccttcct
aaagcacatatacatacatggcagggccatactaaaggtatatcagctattagatggttt
ccaaggtctgctcatttacttatgtcctgcagcatggattgtagggttaagttgtgggat
gtctatagagatagaaaatgtattcgaacttatattggtcatacacaagcagttagagat
acatgttttaacaataaaggcacaaaatttttatcagcagcatacgatcggtatgttaaa
ctatgggacacagaaactggagattgcataaaaagttttacgaatcataaagtattatat
tgtgtaaaattcaacccggaagaagaaaaacaacatttatttgttgctggtactgctgat
aagaaaattgtttgttgggacactagatcaggaaatattgttcaagaatatgaaagacat
ttgggagcagttaacagtatcacctttgttgatgaaaatagacgatttgtcacaacatct
gacgataaaagtttacgtgtttgggaatgggatataccagtagatatgaagtatatagct
gatccaaccatgcactcaatgccaagtgtaacaattgcaccaaataaaaagtggctagct
tgtcaaagtatggataataaaatagttatattctcggcaatgaatcgtttcaaagtgaat
agaaaaaagagtttttctggtcatatggtagctggatatgcttgttcgttagacttttca
cctgatatgagttacctagtctcgggagatgctgatggaaaagtatttatttgggattgg
aaaacaagtcgtttgtatacaaaatggaaagcgcacgataatgtgtgtattgctgcatta
tggcatccacacgaacctagcaaagtagcaactgctggatgggatggactgatcaaatat
tgggattaa
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