Aphis gossypii (cotton aphid): 114124560
Help
Entry
114124560 CDS
T05869
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114124560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114124560
Enzymes [BR:
ags01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114124560
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114124560
mRNA degradation factors
3'-5' decay
Ski complex
114124560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
MTR4_beta-barrel
Helicase_dom4_arc
Intein_splicing
Ski2_N
nSTAND3
Ski2_beta-barrel
AAA_22
Motif
Other DBs
NCBI-GeneID:
114124560
NCBI-ProteinID:
XP_027843654
LinkDB
All DBs
Position
3:45978317..45987222
Genome browser
AA seq
1181 aa
AA seq
DB search
MDNIKMKYEVPGGITSIMPSIPADLLSYINCIENLPVYKGESILPKRDINLSSLYADNDI
NYMPTNLIPERDPKTGKIVNYEEVINDPIFQSEGNSIPCLKSMNSQSTVDQHEDNTFQFQ
FDPNDLPIAPGMSNKLKINKNDQNTSINICAIDTAVEDEWTEDVGGFWDDEVPEIISQPD
NIPEPISVDEINHIKKDENFVLKITGNAERVLVKSKWVEELDISKPIDNFDELLPDPAYK
WEFELDTFQKQAVLKLEEKSSVFVAAHTSAGKTVIAEYAIALAKKHQLRCIYTSPIKALS
NQKFRDFKKKFGDVGLITGDFQVKPEAQCLIVTTEILCSMLYSDSDKIKETEFVILDEVH
YVNDRDRGHIWEQILIMLPKRVKLVMLSATVTNVIDFANWIGRTRDSKIYVVFTLYRPVP
LEHYLYVGSNTSMEMKDNMHLIRKADSGFLIQGYRKASDLLKKNKEVKKYQDSKSIKDQK
PKWVNFLRFLDKNNLFPTVVFILSRKKCDMMAESLKNSVNFLLNNKESQANEYFFNDAIK
KLKPEDRALPQVVLMKELLCQGIAVHHSGILPILKEIVEMQFQKSLVKCLFATETFAIGI
NMPARTVVFEAINKFDGIEKRNLAPAEYTQMAGRAGRRGHDDSGTVIIMANDQLPNDREL
TNMMLGKSAKLESQFKVSYSIILNMFKKKNSETLEEILGSSFIEAARAKKKDEYTEELNS
LKIIHENNNWEPTGKQDLTVKEFYLRAKDYLDCRNEEWDKLYAASDKSFSEVGRFVIITH
QHYIGNLAIILSSNAKKIPREFRVLVLDNDKVNNDGSDNKMDSWYKFIYLSKKRRSLNKS
LDDISNNAHTILTITSNSIFAITKFSGNFDNDSIIKNWEMRQNERFRDAAISTHCQRAIT
MLSEKTLLLNRAENDDSVISLLDLGIDNFELHRTMLHMHALENQVYNIELSDIIAFEEVF
SKLYEYQTRIERIAELQHQISNKALQLYNEYISKVEILKELKYINPRNEITTQKGNVAAT
MGSHELLVTELLLCNMFEEMKPEEIAAVLSCLVCESKSNIDLEQIKEQNLINGMNLIKQK
HDYIQSVESNYLSNYERVNLNFNLVKVLYLWAQEKPFSEIMEITDIQEGIIVRCIVQLNE
ILTVIKNAAKMIGTNKISEKMQEVLDKIKRNIVFTPSLYME
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggacaatatcaaaatgaaatatgaggtacctggtggtattacctcaataatgccaagc
attccagcagatttactaagttatataaattgtatagaaaatttaccagtgtataaaggt
gaatcaatcctgccaaaaagagatattaatttatcatccttgtatgctgataatgatata
aattatatgccaactaatttaatacctgaaagagatcctaagaccggtaaaattgttaac
tatgaagaagttattaatgatccaatttttcaatctgaaggtaattcaataccatgtcta
aaatcaatgaacagtcaaagtactgtcgatcaacatgaggataatacgtttcaatttcaa
tttgatcctaatgatttaccaatagcaccaggaatgtcaaacaaactaaaaataaataaa
aatgatcaaaacacttctataaacatttgtgctattgacacagcagtagaagatgaatgg
actgaagatgtaggaggattttgggatgatgaagtaccagaaataataagtcaaccagat
aatataccagaacccatttcagtagatgaaattaatcacattaaaaaagatgaaaacttt
gttcttaaaattactggaaatgcagaaagagttttagtaaaatctaaatgggttgaagaa
ttagatatttcaaaaccaattgataattttgatgaattattacctgatccagcttataaa
tgggaatttgaattagatacatttcaaaaacaagcagtacttaaattggaagaaaaaagt
agtgtatttgtagcagctcatacatctgcaggtaaaactgttattgcagaatatgctata
gcacttgctaaaaaacatcaattaagatgcatatatacatctccaattaaagcgttatcc
aatcaaaaatttcgagatttcaagaaaaaatttggagatgttggtcttattacaggagat
tttcaagtgaaaccagaagctcaatgtcttattgttacaactgaaatattatgttctatg
ctatatagtgattcagataaaatcaaagaaactgaatttgttattcttgatgaagttcat
tatgtaaatgatagagatagaggtcacatttgggaacaaattttaattatgcttcctaaa
cgtgtgaaattagttatgttgagtgctactgttactaatgttattgattttgccaactgg
attggtcgtactcgtgattctaaaatttatgttgtatttactctgtatcgaccagttcct
cttgaacattatctttatgttggttcaaatacatctatggaaatgaaagacaacatgcat
ctaattagaaaagcagacagcgggtttctaattcaaggctatcgtaaagcttcagactta
ttaaaaaaaaacaaagaagtaaaaaaatatcaagattccaagagtattaaagatcagaaa
cctaaatgggttaattttttgagatttcttgacaaaaataatttgtttccaacagttgtt
ttcattttgtccagaaaaaaatgtgatatgatggcagaatctttaaaaaactctgtcaat
tttttattaaataataaggaatcacaagcaaatgaatatttttttaatgatgctataaaa
aaattaaaacctgaagacagagctttacctcaagttgttttaatgaaagaattattatgt
caaggtattgcagttcaccatagtggaattttaccaattttaaaagaaatagtagaaatg
caatttcaaaaaagtttagtaaagtgtctatttgccactgaaacatttgcaataggtatt
aatatgccagcaagaacagtggtctttgaagcaattaacaaatttgatggtatagaaaaa
agaaatttagcaccagctgagtacactcaaatggcaggtcgtgcggggcgtcgtggtcat
gatgatagtggtacagttataataatggcaaatgatcaattacccaatgacagagaatta
acaaatatgatgttaggtaaatcggctaaattagaatctcagtttaaagtcagttattct
attatattgaacatgtttaaaaagaaaaattctgaaactctagaagaaattttaggtagt
agtttcattgaagctgctagagctaagaaaaaagatgaatatacagaagaattaaattct
ttaaaaataatacatgaaaataataattgggaaccaacaggaaagcaagatttaactgta
aaagaattctatcttcgtgccaaagattatttagactgtagaaatgaagaatgggataaa
ctttatgctgcaagtgataagagttttagtgaagttgggagatttgtcattattacacac
caacattatattggaaatttagcaattatattatcaagcaatgcaaaaaaaattccaaga
gaatttcgggtattggtgttagataacgataaggtaaataatgatgggtctgataataaa
atggattcatggtataagtttatatatttatctaaaaaaaggagatcattgaataaatca
ttagatgatatatctaataatgctcataccattttaactataacttcaaattcaatattt
gcaattactaaattttctggaaattttgataatgactcaattataaaaaattgggaaatg
agacaaaatgaacgttttagagatgcagctatttcaacacattgtcagagagctattaca
atgctatcagaaaaaacattacttttaaatcgagcagaaaatgacgattcagtgataagt
ttactagatcttggaattgataattttgaattgcacagaactatgttacatatgcatgca
ttggaaaatcaagtgtacaatattgagttgtctgacattattgcatttgaagaagttttc
tcaaaattatatgaatatcaaacaagaatagaaagaatagcagaattacaacatcaaata
tcaaacaaagcattacaattatataatgaatatattagcaaagtagaaattctcaaagaa
ctaaaatatataaatccaaggaatgaaataactacccaaaaaggaaatgtagctgcaact
atgggatcacatgaacttttagtcactgaactactattatgcaatatgtttgaagaaatg
aaaccagaagaaattgctgctgttctttcatgtttagtttgcgaatctaagtcaaatatt
gatttagaacaaattaaagaacaaaatttgataaatggaatgaatttaataaaacaaaag
catgattacattcagtcagttgaatcgaattatttaagcaactatgaacgtgttaatctt
aacttcaatttagtaaaagtgctatatttatgggctcaagaaaagcctttttctgaaata
atggaaataacagatattcaagaagggattatagtcaggtgcatagttcaattaaatgaa
attttgactgttattaagaacgcagcaaaaatgattggtactaacaagataagtgaaaaa
atgcaagaagtacttgacaaaatcaaaagaaatattgtatttactccatctttgtacatg
gaatga
DBGET
integrated database retrieval system
