Aphis gossypii (cotton aphid): 114125021
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Entry
114125021 CDS
T05869
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114125021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114125021
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114125021
mRNA degradation factors
5'-3' decay
Decapping complex
114125021
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
114125021
NCBI-ProteinID:
XP_027844295
LinkDB
All DBs
Position
X:complement(48177203..48192522)
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AA seq
631 aa
AA seq
DB search
MDGEDFMTDQQAKFDDDFEEEIYDEDKYDALNDETFGNDMSDGDWEADHEKYAQYDEVIK
KKWPDETEVNDYLANSIPSDPNVFTESLKTLPDLERELRQLHTFNHQYEVPPLPLPFQYQ
NNLNFVNQNYGINLPSNNCGPIRRPIPVQGSNPIPRNVFNAPPGFREVNVNGHIDDILTK
PPPKVISSAISVADLERQLIDAVKINPTYNRPVPEVNQGYLPFSQYYKREIPQYNLPNVR
VVPKNFPRNNNNVPRNLVNNVKRFNNNMVYQNFPKMKNYTFDEQSDFTDYGAGFMTVREK
HWLAGIQTIQFHNSNPLEEDYYFTMYQKRHHGSSGPKPNNNFHQTDTQSKFNNSYTQLHF
ENSLGKVLIGSVITPRKMIDIETNDFAPSSTSSTDRAVVAQKNSKQILLEIEHMYIPLLK
IEQTYYAIRNKAQAAPTVQQYIDELTEILSNHLHHLVSYVTIRKGKQLVHRILPHLKNPS
FLWSVFFGPSICTIISKDNEDQLLLLFLPYIRQWIFCLSLTELNQIAEYLMKNLSYVLIS
VFGISVIANMIERAEEVRPTTERKVLKQWSIFISNVIFVGSENTIQRPVIGLDKKIIEQH
LTYLPLDQSITLEKRLNLVQRISFLGDTTKK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgaagattttatgacggatcaacaggcaaagtttgatgatgattttgaagaa
gaaatttatgatgaagacaaatatgatgctcttaatgatgagacttttgggaatgatatg
tcagatggtgattgggaagcagatcacgaaaaatatgctcaatatgatgaagttattaaa
aaaaaatggcctgatgaaacagaagtcaatgattatttagctaattcaattccatctgat
ccaaatgtgttcaccgagtctttgaaaacattaccagatctagaaagagaattaaggcag
ttacatacatttaaccaccaatatgaagtaccgcctttaccattacctttccaatatcaa
aataatttaaattttgtaaatcaaaattatggtattaatctaccaagtaataattgtggt
ccaattagaagaccaattccagttcaaggctcaaatcctataccacgaaatgttttcaac
gcacctcctgggttcagagaagtaaatgtaaatggacacatagatgatattttgactaaa
cctccaccaaaagtcatttcatcagccataagtgtagctgacttggaaagacaattgatt
gatgctgtaaaaataaatccaacttacaaccgccctgttccagaggtgaatcaaggatat
ttacctttttctcagtactataaacgtgaaattccccagtacaatttaccaaatgttcgt
gttgtaccaaaaaattttccaaggaataacaataacgttcccaggaatcttgtaaataac
gttaaaagatttaataacaacatggtttatcagaattttcctaaaatgaagaattatacg
tttgatgaacaatcagattttactgattacggtgctgggtttatgacggtaagagaaaaa
cactggttagctggaatacagaccatacagttccataatagtaacccattagaagaagat
tactattttacgatgtatcaaaaacgtcatcatggatcaagcggacctaaacccaacaat
aattttcatcaaacggatacacaatctaaatttaacaattcatatacacaattacatttt
gaaaattctttaggaaaagtactgattggcagtgtgataactccaagaaaaatgattgat
atagaaacaaacgattttgcaccttcttctacatcttcaacagaccgagctgtagttgct
caaaaaaattcaaaacaaatccttttagaaattgaacatatgtatataccactactgaaa
atagaacaaacatattatgcaataaggaacaaagcacaagcagcgcctactgtacaacaa
tacattgatgaactaacagaaattttgtctaaccacttacatcacttagtttcatatgtg
actatacgtaaaggaaaacaattggtgcatagaattttaccccatctcaaaaacccatcg
tttttatggagtgtattttttggaccttcaatttgtacaataatttcaaaggataatgaa
gatcaattattattacttttcttgccgtatataagacaatggatattctgcttaagtctc
actgaattaaatcaaattgcagagtatttaatgaaaaatctttcatacgttttgataagt
gtttttggcatatcagttatagcaaatatgattgaacgagcagaagaagttcgaccaaca
acagaacgaaaggtattgaaacaatggagtattttcataagcaatgttatatttgttggc
tcagaaaatacaatacaaagaccagtcattggtttggataaaaaaattatagaacagcat
ctcacatatttgccgttagatcaatctattacacttgaaaaaagattaaacctcgtacaa
agaatcagtttcttgggcgacacaactaagaaataa
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