Aphis gossypii (cotton aphid): 114125068
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Entry
114125068 CDS
T05869
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114125068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114125068
03041 Spliceosome [BR:
ags03041
]
114125068
03009 Ribosome biogenesis [BR:
ags03009
]
114125068
03016 Transfer RNA biogenesis [BR:
ags03016
]
114125068
Enzymes [BR:
ags01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114125068
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114125068
Spliceosome [BR:
ags03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114125068
Complex C
U4/U6.U5 tri-SnRNP related factors
114125068
Ribosome biogenesis [BR:
ags03009
]
Eukaryotic type
Pre-60S particles
Helicases
114125068
Transfer RNA biogenesis [BR:
ags03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114125068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
114125068
NCBI-ProteinID:
XP_027844354
LinkDB
All DBs
Position
2:57634604..57643861
Genome browser
AA seq
1021 aa
AA seq
DB search
MDDFGDDLFDDFEKPSTTSFSAGVSKPNDDKHNSDDKTTKRSLQLSDDEDDNLKKTKNPD
ELSALDLEVSAPRIKIFAVESLDGESCTHEIALPLNFDYIPLNRDANRKPAKVYEFELDP
FQKEAIVCIENNQSVLVSAHTSAGKTVVAEYSIALSLRESKRVIYTTPIKALSNQKYREF
HEEFVDVGLITGDVTINPSASCLIMTTEILRSMLYRGSEILKEVGWVIFDEIHYMRDKER
GYVWEETLILLPDNVRLVFLSATIPNARQFAEWVAHLHNQPCHVVYTEYRPTPLQHYLYP
AGGEGLHLIVDENNKFREDNFAAAMNVLTNVTQPVKHYGQPNRPTANNPDNESNCFKLVK
MIMERNFAPVIVFSFSKKDCENYAMQMSKLDFTSDTEKGLIDKLFENATKVLSEEDRKLP
AVINIIPLIRRGIGIHHGGLLPILKETIEILFGEGLLKVLYATETFAMGLNMPARTVLFT
ACRKFDGKERRFITSGEYIQMSGRAGRRGLDDKGIVMLIIDEKVSPDTVRDIVQGKPDSL
NSAFHLTYNMVLNLMRVEEIDPEYMLERSFFQFQNQSAIPELVEKVKELSVEKNKIIIDN
EFDVRSYFLIRQQLEDLAKQYHSFITDPKNLVPFCNPGRLVKIKKNDVDFGWGVIVNFKS
VLKSKHEGGGIGEAILNVLLNLERSVENTEDEPIPCTSGKLGEPEIINVRHNMVEDLSSL
RLNKMPNDLKSRDSRMLLYNNVKEVLQRCSTDIPLLDPINDMNIKDPEFDKVIEQIEKFE
SRLFAHPLHEKEDVDELYTLYLEKDKVDRELLKFKTELKKAKSLMQMDDLKCRKRILRRM
GYCTAGEVIETKGRIACELSSADELLMTELMFNGVFNDLSVPQTVALLSCFVCDEKSNEL
PAKTAELAGPLRKMQELARKIAKVCKDAKLDIEEDSYVEGFKPFLMDVCYEWCRGATFYQ
ICQMTDIFEGSIIRAMRRLEEILRQLIQASKSIGNTDLENKFSESVKIVKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggatgattttggtgacgatttatttgatgattttgaaaagccatctactacttctttt
tctgctggagtatcaaaacccaatgatgataaacacaattctgatgataagaccacaaaa
cggtcattacaactatctgatgatgaagacgacaatttaaaaaagacaaaaaatccagat
gaactatctgctttagaccttgaagtgtcagctcccaggataaaaatttttgctgtagaa
tctcttgatggagaatcatgtactcacgaaattgctcttccattaaattttgattatata
ccattaaatcgagatgctaatagaaaaccagctaaagtatatgaatttgaattagatcct
tttcaaaaagaagctattgtttgtattgaaaataatcaatctgttcttgtatcagctcat
acatctgctggtaaaactgtggtagctgaatacagtatagccctatctctaagagaatca
aaacgtgtaatttatactactcctataaaagcattaagtaatcaaaaatatcgtgaattt
catgaagaatttgttgacgttggtcttattacgggtgatgttactattaatccatcagct
agttgtcttatcatgacaacagaaattcttcgttctatgttgtatcgtggttccgagatc
ttaaaagaagtcggatgggtaatatttgatgaaattcattacatgcgtgataaagaacgt
ggttatgtttgggaagaaactttaatattattacctgacaatgtgcgattggtctttttg
tctgctactatacctaatgctaggcagtttgctgaatgggtagctcatttgcacaatcaa
ccatgtcatgtagtatatactgaatacagacctacaccattacaacattacttatatcct
gctggtggcgagggtttacatcttattgtagatgaaaataacaaattccgggaagacaat
tttgcagcagctatgaatgttctaaccaatgttactcaaccagttaaacattatggacag
cctaatcgacctacagctaacaatccagataatgaatctaattgcttcaagttagttaaa
atgatcatggaacgaaactttgccccagtaattgtattttcattcagtaaaaaggattgt
gaaaattatgccatgcaaatgtccaaattagattttacttcagatactgaaaaagggtta
attgataaattatttgaaaatgctactaaagtattatcagaggaagaccgtaaactacct
gcagttataaatataataccattaattcgacgtggcataggtattcaccatggaggtctt
ttaccgatcttaaaagaaactatagaaattttgtttggtgaaggtttactgaaagtttta
tatgctactgaaacatttgccatgggcttaaatatgcctgcaagaacagttttatttact
gcttgtcgaaaatttgatggcaaagaaagacggtttataacatcaggagaatatatacag
atgtcaggtcgagctggtagacgaggtttggatgacaaaggtattgttatgttgataatt
gatgaaaaagttagtccagatactgtcagggatattgtgcaaggaaagccagattcactt
aattcagcatttcatttaacatataacatggttttgaatttaatgcgtgtagaggaaatt
gatccagaatatatgttagaaagaagctttttccaatttcaaaatcaatcagcaattcca
gaattagtagaaaaagtaaaagaattgtcagttgaaaaaaacaaaataataatagataat
gaatttgatgtgagatcatattttttgattcgtcaacagttagaagatttagcgaaacaa
tatcattcttttataacagaccctaaaaatttagtacctttttgtaatcctggaagactt
gtcaagataaaaaagaacgatgtggattttggttggggtgtaattgttaattttaaatct
gtattaaaaagtaaacatgaaggtggcggtattggcgaagcaatattaaatgtgctatta
aatttggaaagatctgttgaaaatacagaagatgagcctataccatgtacttctggaaag
ttaggagaacctgaaattattaatgtcagacataatatggttgaagatttaagttctttg
cgattaaacaaaatgccaaatgatttgaaatcccgtgactctcgaatgttgctgtataat
aatgttaaagaagttttacaaaggtgttcaactgatattcctttattagatccaattaat
gacatgaatataaaagatccagagtttgataaagttattgaacaaattgaaaaatttgaa
agtagattgtttgctcatccattacatgaaaaagaagatgttgatgaactttatactcta
tatttggaaaaagataaagtggatcgggaacttttaaaatttaaaactgaattaaagaaa
gctaagtcgctcatgcaaatggatgatctcaaatgtagaaaacgcatcttgaggcgaatg
ggctattgtactgctggagaagttatagaaactaaagggagaatagcatgtgaattgagc
agtgctgatgaattactaatgactgaattaatgttcaatggcgtgttcaatgatttatca
gtaccccagacggtagcattactcagttgttttgtatgtgatgaaaaaagtaatgaactg
cctgcaaaaactgctgaattagcaggacctttaagaaaaatgcaggaacttgcaagaaaa
atagctaaagtttgtaaagatgccaagttagatattgaagaagattcttatgtagaaggc
tttaaaccattcttaatggatgtttgttacgaatggtgtcgtggtgccacattctatcaa
atatgtcaaatgactgatatatttgaaggaagcataataagagcaatgagacgtttagaa
gaaatattaagacaattaattcaagcatccaaaagtattggcaacactgatcttgaaaat
aaatttagtgaatctgtaaagattgttaaaagagatattgtatttgcagcaagtctttat
ttataa
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