Aphis gossypii (cotton aphid): 114126209
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Entry
114126209 CDS
T05869
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2 isoform X1
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03018
RNA degradation
ags03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114126209
09123 Folding, sorting and degradation
03018 RNA degradation
114126209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114126209
03041 Spliceosome [BR:
ags03041
]
114126209
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114126209
mRNA degradation factors
5'-3' decay
Lsm complex
114126209
Spliceosome [BR:
ags03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
114126209
Complex C
U2 snRNP components
114126209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
114126209
NCBI-ProteinID:
XP_027845901
LinkDB
All DBs
Position
X:3624682..3627869
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AA seq
113 aa
AA seq
DB search
MVPTYCKFVIFNKIVRLTSKMLFYSFFKTLVGHEIIVELKNDICVTGRLHSVDQFLNIKL
IEVCVSDPEKYPYMNYISESFIRGSVVRYVQLPVNSVDSQLLQDAARKEITIR
NT seq
342 nt
NT seq
+upstream
nt +downstream
nt
atggtacctacctactgcaagtttgttattttcaataaaattgtccgtttgacttcgaaa
atgctattctactcattttttaaaacacttgtggggcatgaaattatagttgaacttaag
aatgacatctgtgtcactggaagattgcattctgttgatcaatttttaaatatcaaactt
atagaagtctgtgtaagtgatccagaaaaatacccatacatgaattatatatcagaatct
ttcatcagaggttcagttgttcgatatgtacaacttccagttaattctgttgattcacaa
ttgttacaagatgctgctcggaaggaaattaccattcgataa
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