Aphis gossypii (cotton aphid): 114126362
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Entry
114126362 CDS
T05869
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03022
Basal transcription factors
ags03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114126362
09124 Replication and repair
03420 Nucleotide excision repair
114126362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ags03021
]
114126362
03400 DNA repair and recombination proteins [BR:
ags03400
]
114126362
Transcription machinery [BR:
ags03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114126362
DNA repair and recombination proteins [BR:
ags03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114126362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
114126362
NCBI-ProteinID:
XP_027846100
LinkDB
All DBs
Position
3:complement(19759703..19762871)
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AA seq
553 aa
AA seq
DB search
MTSSEDVLLQVGPVRHKKGDGTLYVMSQHVAFILNSSDTVAISHHYRDIKMQKISSEFKN
KVQLQLVFHDETISLFQFTNSERSEAMRDRNRVKDLIQQLLPKYQKQANKEFGEKSRILG
ENRMLFQLYQDLVITHVITSEEFWSQHVPYHLATQSKVITQKTGVPNNFLTNVTVKSDGT
KKFNLSNDTIQCIFKTYPAVRQKHIEYVPHQLTESEFWQKFLESHYFHKDRITTGSTKDL
FNDCAKLDDNLFKNEIKDLSKNNTDCYVGSIEDDGSDDNIISISEEKSSMANIVHENIIK
RFNQHSMMVLKTCEKSNVNSIPNGNDLKVPSNSSHINGTPDTSLKRLRIQEKNDFEDLNP
ETETLDINQKKLKLSRVESYVNCLTREHKHDNTASKLSKAREVQKSIIYDVYEWSKSTSN
QVIEPSAAVNTLGLLTPGGSLMKGISDESASLAQLVPVTVEKDLRQLYVSLGELLRHFWS
CFPVTTPALEEKLMKTHDSLQKFQNAKIKPFEDQIIINHGQLNQLTNHLNLMLHTAYNKF
SVWHSRRKIPNIL
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgtcagaagatgtgctccttcaagtggggccagtacggcataagaagggcgat
gggacattgtatgtcatgagtcaacatgttgcatttattctcaattctagcgatactgtt
gctattagccaccattatagagatattaaaatgcaaaaaatatcatcagaattcaaaaac
aaagttcaattacagttggtgtttcatgacgaaacaatttcactatttcaatttaccaac
tctgagaggagtgaagctatgcgagatagaaatcgagttaaagacttaatacaacaatta
ttgccaaaatatcaaaaacaagcaaacaaagaatttggtgaaaaaagccgtattcttggc
gaaaatcgtatgctttttcagctatatcaagacctagtcattacccatgtcataacatcc
gaagaattttggtcacaacatgtcccttatcatttagctactcaatccaaagtaattact
caaaaaactggtgtacctaataattttcttaccaatgttactgttaaaagtgatggtaca
aaaaaattcaatttatctaatgataccatacaatgtatctttaaaacatatccagcagtt
agacaaaaacatatagaatatgtaccacatcaattaacagaatcagaattttggcaaaag
ttcctagaatcccattattttcataaagaccgtattactactggaagtacaaaagattta
tttaatgactgtgccaaattggacgataatttatttaaaaatgaaattaaagatttatct
aaaaataatacagattgttatgttggatcaatcgaagatgatggatctgatgataatata
atatctatatctgaagaaaaatcttcaatggcaaatattgttcatgaaaatattattaaa
cggtttaatcaacattcaatgatggttcttaaaacatgtgaaaaatctaatgtaaactct
atacctaatggaaatgatttaaaagtaccatctaattcatctcatataaatggtacacca
gatacttcattaaagaggttgagaattcaagaaaaaaatgattttgaagatctcaatcca
gaaacagaaactttggatattaatcaaaagaaattgaaattatctagagtagaaagctat
gtaaattgtttaacaagagaacataaacatgataatactgcatccaaactttctaaagca
agggaagtgcagaagagtattatttatgatgtttatgaatggagcaagtcaacttcaaat
caagtaattgaacctagtgcagctgttaatactcttggtttgcttacaccaggaggaagt
ttaatgaagggtattagtgacgaatctgcttcattagctcagttggtaccagttacagtt
gaaaaggatttacggcagttgtatgtttctttaggagaactattaagacatttttggtca
tgttttcctgtaacaacacctgcattagaagaaaaactaatgaaaactcatgattcctta
caaaaatttcaaaacgccaaaattaagccttttgaagaccaaattattattaatcatggt
caattaaatcagctcacaaatcatttaaatctaatgttacatactgcctacaataaattt
tctgtttggcattccagacgaaaaatacctaatattctttga
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