Aphis gossypii (cotton aphid): 114127403
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Entry
114127403 CDS
T05869
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03020
RNA polymerase
ags03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114127403
09124 Replication and repair
03420 Nucleotide excision repair
114127403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ags03021
]
114127403
03400 DNA repair and recombination proteins [BR:
ags03400
]
114127403
Enzymes [BR:
ags01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114127403
Transcription machinery [BR:
ags03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114127403
DNA repair and recombination proteins [BR:
ags03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114127403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_6
RNA_pol_Rpb1_4
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
Motif
Other DBs
NCBI-GeneID:
114127403
NCBI-ProteinID:
XP_050057740
LinkDB
All DBs
Position
2:17435103..17447116
Genome browser
AA seq
1863 aa
AA seq
DB search
MAASDSKAPIRSVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVI
DRFSRCQTCAGNMTECCGHFGHIELAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPK
VKEIVMKSKGQQRKRLAYIYDLCKGKNICEGGDELDINKDNVNDPNVPPKKQGHGGCGRY
QPTIRRVGLDLTAEWKHVNEDSQEKKIPLTAERVHEILKHITDEEVVIMGMDPKFARPDW
MVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKLSDIIKCNNELIRNEQSGAATHIIAENI
RMLQYHVATLVDNDMPGLPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDHMLELVRRGNSQYPGAKYIIRDNGERI
DLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLS
CTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRK
MTKRDVFLEKEQMMNLLMHLPIWDGKMPTPCILKPKPLWTGKQLFSLIIPGNVNLIRTHS
THPDEEDNGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGR
FYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMDLEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLSGEAVEFQSIA
TIEPSHKKFEDEFKFDISNERHMRKIFNEDVLKELMGSNDSVSELEKEWEQLNNDRDTLR
EIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGQTDLNPVKVINGVKDLLDKCIIVAGED
ELSKKANKNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLIGAA
ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEMPDFDPSRI
SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADKLVLRIRIMNGEDG
KINGGDDEDNVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKKRIIITDT
GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTV
LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAAAH
AEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKAKDGIEIPMDNGYMGMGGGGMFMAAG
TPSMSPAMTPWDQTSTPVYQNSWSSSLEAGMTPGGPGFSPAGSSEASGTSPFWMTSGGTP
GSPGSPGMPTSPYVPSPNSMSPNYNYPSSPQFGSMSPSMTPTNYSPTSPQYSATQQNTPK
YSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQY
TASSPSYTPSAASGASNYKYSPTSPSLAVSPTYSPTSPMYSPSNASYSPSSIQHGSSNTG
ATQYNQSYSPSSPVYSPTNFSLTSPRYSPTSPTYSPGVGSPNYSPSSPSYSPTSPNYSGP
EEQ
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atggccgccagtgactcaaaggctccaatccgaagtgtcaaacgagtacaattcggtata
ttgtctgcggacgaatgtcgacgtatgtcagtcacggaaggtggcattcgttttgcagag
actatggaaggtggacgtccaaaacttggtggacttatggatcctaggcaaggagttatt
gatcgtttttcaagatgtcagacatgtgcaggtaacatgactgaatgttgtggacatttt
ggtcacattgagctagctaaacctgtgtttcatgtaggttttgttactaaaaccataaaa
atcctccgttgtgtttgtttttactgttctaaattattagttagtccatctcatcccaaa
gtaaaagaaattgttatgaaatcaaagggacagcaaagaaagcgtttagcatatatatat
gatctatgtaaaggaaaaaatatttgtgaaggtggtgatgaactagatattaacaaggat
aatgtcaatgatcctaatgtacccccaaaaaaacaaggacatggtggttgtggtcgttat
caacctactatacgacgtgtaggtttggatttaactgctgaatggaagcatgttaatgaa
gattctcaggaaaaaaaaatacctttgactgctgaacgtgtacatgaaattttgaaacat
ataactgatgaagaagttgtaatcatggggatggatcctaaatttgcacgtcctgattgg
atggtattaacagttttacctgttcctcctttaccagttcgacctgctattgttatgttt
gggtctatgagaaatcaagacgatttaactcacaaattatctgacataataaaatgtaat
aatgaattaatacgcaatgaacaatctggtgctgctactcatattatagctgaaaatata
agaatgttacaataccatgttgctactttagtagataatgatatgccaggtctaccaagg
gcaatgcagaagtctggtaaacctctgaaagcaataaaatcacggttgaaaggtaaagaa
ggaagaattcgaggaaatttgatgggaaaacgtgtcgatttttctgcaagaactgtaatt
acccctgatccaaatctgagaattgatgaagtcggtgtacctcgtactattgctcaaaat
atgacatttcctgaaattgttactccttttaacatagatcatatgttggagttagttcgc
cgtggcaattctcaatatcctggcgctaagtatattatacgtgataatggtgagagaatt
gatttacgttttcatcctaaaccttcagatttacatttgcaatgtggctataaagttgaa
agacacattaaagatggcgatttagtagttttcaatagacaacctactttacacaaaatg
agtatgatgggtcatcgagttagagttctaccttggtccacatttagaatgaatttaagt
tgtacttctccttataatgctgattttgatggggacgaaatgaatcttcacgtccctcaa
tctatggaaacaagagcagaagtggaaaatatccatattactccaagacaaattattact
cctcaagctaataaacctgttatgggaattgtgcaagatactttaacagctatcagaaaa
atgacaaaaagagatgtgtttcttgagaaggaacaaatgatgaatttactaatgcatcta
ccaatttgggatggaaaaatgcctaccccgtgtattctaaaacctaaacctttgtggact
ggtaaacaacttttctcattgattatacctggtaatgtcaacttgatacgtactcattct
actcaccctgatgaagaagataatggaccttataaatggatatcacccggtgatacaaag
gtaatggttgaacatggtgaattagtaatgggaatattgtgtaagaaaaccttaggtact
tcagctgggtcattacttcatatttgtatgttggaattgggacatgaagtgtgtggaaga
ttttatggtaatattcagactgtggttaataactggcttttatatgaaggccattctatt
ggtattggtgatactattgctgatcctcaaacttatttggaaattcaaaaagctattaaa
aaagctaaagaagatgtaattgaagttatacaaaaagctcataatatggatcttgaacca
acacctggtaatacccttcgtcaaacttttgaaaatcaagtaaatagaatcttaaatgat
gctcgtgacaagactggaggttctgctaaaaaatctttgactgaatacaacaatctcaag
gctatggttgtatcaggatctaaaggttctaatattaatatttctcaggttattgcttgt
gtaggacaacaaaatgtagaaggcaaacgtataccgtttggttttcgtaaacgtacactg
ccacatttcattaaagatgattatggtccagaatctagagggtttgttgaaaattcatat
cttgctggtttaacaccatcagaattctactttcacgctatgggtggtcgggaaggtctt
attgatacagctgtaaaaactgctgagactggttacattcaaagacgtttgataaaagct
atggagtctgttatggttcactatgatggaaccatacgtaactctgttggtcagttgatt
cagttgcgttatggtgaagatggtcttagcggtgaggcagtagagttccagagtattgcc
actatagaaccatcacacaagaaatttgaagatgagtttaaatttgatatttcaaatgaa
agacacatgagaaaaatatttaatgaagatgtattaaaagagttgatgggtagcaatgat
agtgtatcagaattagaaaaagaatgggaacaattaaataacgatagagatactcttaga
gaaatttttccttctggtgaaagcaaagtggtattaccatgtaatttaaaacgtatgatc
tggaatgttcaaaaaatttttcatattaacaaacgaggacaaacagacttgaatccagtt
aaagtcataaatggagttaaagacttgttagacaagtgtattattgtagctggggaagat
gagttgagcaaaaaagcaaataaaaatgccacattattgtttcaatgtttggtgcgttcc
accctttgtactaagctagtgtcagaaagatttcgtttatcttctgaagcatttgaatgg
ttaattggagaaattgaaaatagattcaaacaggctcaagcacaaccaggagagatggta
ggagcgttagctgctcaaagtttgggagaaccagctactcaaatgacgttgaatactttt
cattttgccggagtatcctcaaagaatgtaactcttggagtgcctagattgaaggaaatc
attaacataagtaaaaaaccaaaagcaccatctttgactgtattcttgattggagctgct
gctagagatgcagaaaaagctaaaaatgtactgtgtcgtcttgagcatactacattgagg
aaagttactgctaacactgctatttattatgatcctgatcctcaaaatacagttattaga
gaagatcaagaatttgtaaatgtttattatgaaatgcctgattttgatccatcaagaatt
tcaccatggttgttgcgtattgaattagatagaaaaagaatgactgataaaaaattaact
atggaagcaatatctgaaaaaatcaatgcaggttttggtgatgatctcaattgtatattt
aatgacgataatgctgataaattagtcttacgtatacgtataatgaatggtgaagatgga
aaaataaatggaggtgatgatgaagacaatgttgataaaatggaagatgatatgttcctt
agatgtattgaagcaaatatgttgtctgacatgaccttacaaggtatagaagccatagca
aaagtttacatgcatttacctcaaacagattcaaaaaaaagaataataattactgatact
ggagaatttaaagcaattgctgattggttgttagaaactgatggtactagtttaatgaag
gtgttgagtgaaagagacgtcgatcctgtaagaacattttccaatgatatttgtgaaata
ttttcggtcttgggtattgaagctgtacgaaagtctgttgaaaaagaaatgaacactgta
ttgcagttttatggtttgtatgtaaactatcgtcatttggcattgttgtgcgacgtaatg
acagccaaaggtcatttgatggccattactcgacatggtattaatagacaagatacagga
gctttaatgagatgttcatttgaagaaacagttgatgtgttattggatgctgctgcacat
gcagaagttgatccaatgagaggagtatctgagaatatcattatgggtcaattgccgaga
atggggacaggttgttttgacttacttttggatgctgaaaaagctaaggacgggatagaa
atacctatggataatggttacatgggtatgggtggtggtggtatgtttatggctgctgga
acaccatcaatgtctcctgctatgacaccttgggatcaaacttctacgccagtttatcaa
aatagttggtcatcgagtttggaagctggtatgactcctggaggacctggattttctcca
gctgggtctagtgaagctagtggaacatctccattctggatgacaagtggaggaactccg
ggtagtcctggatctccaggaatgcccaccagtccatatgtgcctagtcctaattctatg
tcaccaaactacaattacccatcaagcccacaatttggttctatgtcaccatctatgact
ccaactaattattcaccaacaagtccacaatattcagccacacaacaaaacactccaaaa
tattcttctatgtcacctaactacaactattctccaaccagtccatcatattcacctact
agtccatcctactctcatacgtcatactcaccaacaagtccttcgtacagtccaacatct
ccatcatatagtccaacatcaccttcatatagcccaacatctccgtcatacagtcctact
tctccatcatacagccctacatctccctcatacagcccaaccagcccttcatacagtccc
acatcaccatcgtacagccctacatctccgtcttatagtccgacttcgccatcgtatagc
cctacatcaccatcatatagtccaacttcaccatcttatagcccaagttctccgcaatac
acagcatcttcaccatcatatactcctagtgctgcgtctggtgccagtaattataaatat
tcacccacctcaccatctcttgctgttagtccaacttattccccaaccagtccaatgtat
tcgccatcaaatgcgtcatattctccatcttctatacaacatggttcatcaaatactgga
gctacacaatacaaccagtcttacagtcccagttcaccggtttactcgcctactaacttt
tcattaacaagtcccagatattctcctacatcaccaacatattcacccggtgttggaagt
ccgaattattccccatcttcacccagctattctcctacatcaccaaattatagtggacca
gaagaacaataa
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integrated database retrieval system
