Aphis gossypii (cotton aphid): 114127829
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Entry
114127829 CDS
T05869
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114127829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114127829
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114127829
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR75_1st
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_DCAF12
Beta-prop_RIG_1st
Tricorn_2nd
PEP5_VPS11_N
PROPPIN
Beta-prop_WDR11_2nd
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
114127829
NCBI-ProteinID:
XP_027847963
LinkDB
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Position
3:complement(15013762..15017012)
Genome browser
AA seq
759 aa
AA seq
DB search
MSISVDTSFLVPPPPINFSIPPPSTNTSIPTNYRFQGPIPLHIRGPSLGGPPRHQLNKSA
PPADVDFDGKRLRKSGLRKTVDYNASLIRMLQNRVWQRDFRDRPFLQPDILYTPQLLPPQ
CYIDNSVNSVTTAFVKTVTNKVRCPVFCLAWTPEGRRLITGASSGEFTLWNGLTFNFETI
LQAHDSPVRSMVWSHNGNWMTTGDHTGFIKYWQSNMNNVKMFQAHNEAVRGISFSQSDDK
FATCSDDGTIRIWDFFTNREEKILRGHGADVKCIDWHPHKGLLISGSKDNQQPIKLWDPK
TGQSLATLHAHKSTVMDVKWNANGNWVVSASRDHLLKLFDIRNLSHEVQTFRGHKKEAST
IAWHPYHENLFCSGGSDGAILFWNVGVDKFVGSVDQAHDSIVWSLAWHPLGEVLCSGSND
YTCKFWTRNRPGDKMTGKYHSVNTVSNMLKTDNMCADAQSTIPGMGLEDIDEEDSNKPLV
DNNTIPLLDIASSEETTRVRQIKKIPYSKPIPKNFQKLWTEYKTNDEIIEEEAEENLGPD
SDVVNNVVESLMDLIPGSRPASELKPESLLVYGQMIKVDQNSPLANAIREGRESLMRLLH
SGAIPEVRQHLSFESNKDPIYSYAAKHLQKDQDLRRNQFVNNPNVNFPMNQDVDLRVNNN
FNPNYGPNNFQTAPNDNFNRPVINQASNAMGYNQQPRSYFNKSHPYNNNTPNNRPSRQYG
NNQNGMRNGPPPNLMDSTFSRPSTYRSNSQRPPQNYNNM
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtccatttctgtggatacatctttcttggtacctccacctccaataaacttttcaatt
ccgccgccttcaaccaatacatccattccgacgaactacaggtttcaaggtcccataccg
ttacatattcgtggtccgagtttgggtggaccaccaaggcatcaactgaacaaaagtgcg
ccaccagcagatgtggatttcgatggcaaacgcttgaggaaatcgggtctccgtaagact
gtggattacaatgcatcactaattcgaatgctacaaaatcgtgtttggcaacgagatttc
agagataggccatttttacaaccagatatattatatacacctcaactattacctccacaa
tgttatatcgataactccgtaaactcagttactactgcttttgtcaaaactgttactaat
aaagtacggtgtcctgtattttgtttagcatggacacccgagggtagacgtttaataact
ggtgcgtccagcggagaatttactctatggaacggattgacgtttaattttgaaactatt
ttgcaagcacacgattcaccggttcgttcaatggtatggtctcataatggtaattggatg
actactggtgaccatactggttttattaaatattggcaatcaaacatgaacaatgtcaaa
atgtttcaagcacataatgaagctgtcagaggtattagttttagccaatcagatgacaaa
tttgcaacttgttcagatgatggaactatacgtatttgggacttttttactaacagagaa
gaaaaaatacttagaggacatggagcagatgtaaaatgcattgattggcatccacataaa
ggtcttttaatttctggtagtaaagataatcaacagccaattaagctgtgggacccaaaa
actggacaatcattagccaccttacatgctcataaaagtacagttatggatgtaaaatgg
aatgccaatggtaattgggttgtgtctgcttccagagatcatttgttaaaattattcgat
attagaaatctttcccatgaagttcaaacattcagaggtcataaaaaagaagctagtact
attgcctggcatccatatcatgaaaacttattttgtagtggtggttctgatggtgctata
ttattttggaatgtgggtgttgataaatttgttggttctgttgatcaagctcatgatagt
attgtttggtcattagcttggcatccattaggtgaggttttgtgttctggttcaaatgat
tacacatgtaaattttggacccgaaacagacctggagataaaatgactggaaaatatcat
tcagtaaatacagtttctaacatgttaaaaacagataatatgtgtgctgatgctcaatca
actattcctggaatgggtcttgaagacattgatgaagaagattctaataaaccgttggtt
gataataataccataccacttttagatattgcttctagtgaagaaacaactagagttcga
caaattaaaaaaattccttactctaaacctattcctaaaaatttccaaaagttatggaca
gaatataagactaatgatgaaataattgaagaagaagctgaagaaaatcttggccctgat
agtgatgtagttaataatgtagttgagagtctaatggatttgataccaggctccagacca
gcaagtgaattaaagccagaatctcttcttgtttatggacaaatgataaaagtagatcaa
aattcaccattagcaaatgcaattagggaaggtcgagaatcattaatgcgtcttcttcat
tctggcgcaattccagaagtacggcagcatctatcttttgaaagcaacaaagatccaatt
tattcatatgctgctaaacaccttcaaaaagatcaagacttgcgtagaaatcaatttgtt
aacaatccgaatgtaaactttcctatgaatcaagatgttgatctccgagtcaataataat
tttaatccaaattatggccctaataattttcaaacagctcctaatgataattttaataga
ccagttataaatcaggcatctaatgctatgggatacaatcaacaaccgagatcttatttc
aataaatcacatccttacaataataatacaccaaataataggccatctcgacagtatgga
aacaatcaaaacgggatgcgaaatggtccgccacctaatttaatggactccaccttttca
aggccatccacttacagatcaaattcacaaagaccacctcaaaattataacaatatgtga
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