Aphis gossypii (cotton aphid): 114128384
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Entry
114128384 CDS
T05869
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114128384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ags03400
]
114128384
DNA repair and recombination proteins [BR:
ags03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114128384
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
MLKL_N
AAA_27
ACT_PSP_2
Motif
Other DBs
NCBI-GeneID:
114128384
NCBI-ProteinID:
XP_050058446
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Position
1:43271624..43283243
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AA seq
891 aa
AA seq
DB search
MSKKPINHLNLDPEQQKTFVRFHKSLPDKPLTTVRFFNRQDYYTVHGQDATFAAKDFYKT
NHSIKIIGSDDDTLESLIFNKANFEAYIKQLLLVNHYKVEIFVNKGGKWALDYKGSPGNL
SQFEDLLFGNVEQIEANVVIALKLSPDFKNNKLIGLGAVDTVENKFQLSEFTDDEYFSHT
ESIVIKISPKECILMTDGSNPDVEQLKKVVERCGVLVTMKKKSEFSTDTLIQDLNKLIMF
EEGQQPNAHTLPQLQLEVASAAIAAVIKYLELSSDSDNLNQYTVDNLGYDKFVHLDSAGV
QALNLFSNSGTMSKNDSILGIFNKCRSPHGQRLLTQWIRQPLRDLNKINERLDIVETLVT
DTDIRQQLHDQHLRTIPDLQALMRKIQRKKANLQDCYRIYQAIQKLPDLVQTLSNSDNKT
LNSVITTPLKELVNDMNKYQAMIEETIDLKLIERGEFLIQSGFDDELQEMRNQMDDYETK
MKSNLTKTNGALGISVKLDSNSQYGFFYKVSLKDAKIVSNNKSYEVLDTTKGGGMRFRSS
KLTELNTEYQSIHKNYLEHQKSIVVEVIQTASSYNATILNLSRTLAQLDVLTSFSMLAAS
SLRPYVRPNLHPQGRGLLDLKQVRHPCVEVQDSVSYIPNDAYFEQGKCTFNVITGPNMGG
KSTYIRSVAVAVFMAHMGSFVPCDAAEISVVDAILARVGANDSQIKGLSTFMVEMIETVS
ILKRATSESLVIIDELGRGTSTYEGCGIACAIAERLAAETKAFTLFATHFHELTKLQETI
PTITNKHVSAVTTDDSLTLLYQVQPGSCDKSFGIHVAAMAKFPKNVIQDAAKKLALLESF
QNNLTTEDNLKEINEADKEKFLIECKRCAQECASSDDELFKRIKKLRTEFL
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaaaccgatcaatcatttaaatcttgatccagaacagcaaaagacatttgta
cggttccataaatcactacctgataaacctttaacgactgttcgttttttcaatcggcaa
gattattatactgtccatggtcaagatgctacttttgctgctaaagacttttataaaaca
aatcattcgataaaaattattgggtcagatgatgacacactagaatcattgatattcaat
aaagccaattttgaagcatatataaaacaacttttgttggtcaaccattacaaagtagaa
atttttgtcaacaaaggtggaaaatgggctctagattataagggctcgcctggtaactta
tctcagtttgaagatttactatttggaaatgtagaacaaattgaagcaaatgtagttatt
gctttaaagctaagcccagacttcaaaaataacaagttaattggattaggggcagtagat
acagtagaaaataaattccaactaagtgaatttactgatgatgaatatttttctcacact
gaatcaatagtaattaaaatttcgccaaaagaatgtattcttatgacggatggtagtaat
cctgatgtggaacaattaaaaaaagtagttgagcgttgtggagtacttgtgaccatgaaa
aagaaatccgaatttagtacggatacattaatacaagatttaaacaagcttattatgttc
gaagaaggacagcaaccaaatgcccacactttacctcagttacaacttgaagttgcttct
gctgcaatagctgcagttataaaatatcttgaattatcatctgattcggataacttaaat
caatacactgttgataatttgggatatgacaaatttgttcacttagatagtgctggtgtt
caagcacttaatctattttctaattctggtacaatgtccaaaaatgattctattcttgga
atttttaataaatgtcgctcaccacatgggcaaagattgttaactcaatggatcagacaa
ccattaagagatttgaataaaattaatgaacgcttggatattgttgaaacccttgttact
gatacagatattagacaacaactacacgatcaacatttacgtacaatacctgacctccaa
gctcttatgcgtaagattcaaagaaaaaaagcaaatctacaagactgttataggatatat
caagcaatacaaaagcttccagaccttgtgcaaacactgagcaattcagataataaaact
ctaaatagtgtaattacaactccattaaaagaacttgtcaacgacatgaataaatatcag
gccatgattgaggaaacaattgatttaaaattgatcgaacgaggcgagtttctcattcaa
tcaggatttgatgacgaattacaagaaatgagaaatcaaatggatgactatgaaacaaaa
atgaaatcaaatttaaccaaaactaatggcgcattaggaatttctgtgaaattggattca
aattcacaatatggttttttctataaagtctcattaaaagatgctaaaattgtttcaaat
aataaatcatatgaagttctagacactactaaaggcgggggtatgcgttttcgatcatct
aaactaacagaacttaatacagaataccaaagtatacataaaaactatttggaacatcaa
aaatctattgtagtcgaagtcatccaaacagctagtagttacaatgcaaccatacttaat
ctaagtcgtactctggcacagttggacgttttaacgagcttttctatgctagccgccagt
tctttacgtccatatgtgagaccaaatttacatccccaaggtcgcggtctattagacttg
aaacaagtgaggcatccttgtgttgaggtacaagattcagtatcctacatacctaatgat
gcttactttgaacaaggaaaatgcacatttaatgtaataactggtccaaacatgggtgga
aaaagtacttacattagaagtgttgctgtggccgtttttatggcacacatgggaagtttt
gtaccttgtgatgctgctgaaataagtgtggttgatgctattttagctcgagttggagca
aatgattctcagattaaaggattatctacgttcatggttgaaatgatagagactgtttct
atactcaaaagagctacttcagaatcattggtgattattgacgaattaggtagaggtaca
tcaacttatgaaggttgtggaattgcctgtgccattgcagaacgtttggctgctgaaact
aaagcatttacattatttgctactcatttccatgagttaactaaactccaggagactata
ccaacaatcaccaataaacatgtctctgctgttactacagatgatagtttaacacttttg
taccaagtgcaaccgggatcatgtgataaaagttttggtattcatgttgctgctatggca
aaatttccaaaaaatgttattcaagacgctgctaagaagcttgctctgttggagagtttt
caaaataacctaactacagaagataatctaaaagaaatcaatgaagctgataaagaaaaa
tttctgattgaatgcaaacgttgtgcacaagaatgtgcttcatcggatgatgagttattt
aaacgtataaaaaaattgagaaccgagttcctataa
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