Aphis gossypii (cotton aphid): 114131620
Help
Entry
114131620 CDS
T05869
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114131620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114131620
03041 Spliceosome [BR:
ags03041
]
114131620
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114131620
Spliceosome [BR:
ags03041
]
Complex B
Other components
Prp19-related factors
114131620
Complex C
114131620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_2
TPR_12
NRDE-2
RPN7
Mad3_BUB1_I
TPR_10
DHR-2_Lobe_A
Mad3_BUB1_I_2
MMR_HSR1_Xtn
PPR
Motif
Other DBs
NCBI-GeneID:
114131620
NCBI-ProteinID:
XP_027852681
LinkDB
All DBs
Position
1:complement(80372994..80375992)
Genome browser
AA seq
850 aa
AA seq
DB search
MKMELESNVNEARGNDMSDAVIFQTYWLNKRDVEFEQDILRNPNSVKCWMRYIDNYKLGP
YKKVCVLYERALKQLPGSYKLWHCYLKIRRKYLKTTDNPDYEEVNNVYERALVYMNKMPR
IWIEFCTFMLKQPKLTVARRLFDRALRALPITQHVRIWPLYLKFIKESHDPEVAVKIYRR
YLKLFPEDSEDYIEYLTTSGRLDEAAVRLSEIVNNDSFVSKHGKSKHQLWNELCNLISKN
PLEIKSLNVDAIIRSGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRD
FTQVYDAYAQFEELSLQKRMEVVHANQNSTEKDDCEIDLRMARLENLIERRLLLLNSVLL
RQNPHNVKEWLKRVQLYEGNDVQVINTFTEAVETVDPQKAVGRLHTLWVEFAKFYEKAKQ
VEEARLVFKKAVLVSYIKVEHLASVWCEWVEMELRHENFNEAMRLMRQATSIPSRKVAYH
DDTETVQIRLHKSLKLWSLYLDMEESFGTVKSTMACYDRVIDLRIATPQTIINYGLFLEE
NNYFEEMFKAYEKGVALFKWPNVFDIWNTYLTKFLDRYGGTKLERARDLFEECLESCPPQ
FAKCIYLLYAKLEEKHGLGRRAMAVYERATEAVLPEEKFEMFNIYIKKAAEISGIPKTRE
IYMKALEVLTNNNARTMYLRFAELETKLGEIDRARAIYSHCSQICDPRVTEEFWQTWTSF
EVAHGNEDTLREMLRIKRSVQAMYNIQVNMMSAQMMSVISVEPEKSGMKLLEEKALEKIE
KPLEPIKFVLGSEQDRLPNEKVINPDEIEFSDDENEDDGDKENEENDDEDMPTKKDVPAE
LFGNLGAFTE
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggaacttgagagcaacgtcaatgaggcacgcggaaatgacatgtcggatgct
gtgatatttcagacctactggctgaataagagagatgtagaatttgaacaagacatatta
agaaatccgaattcagtcaagtgttggatgcggtacatagataattataaacttgggccg
tataaaaaagtatgtgtactgtatgaacgcgccttgaaacaactgcctggcagctacaaa
ttgtggcactgttacttgaaaatacgtcgcaagtatttaaaaacaacagacaatccagac
tatgaagaagtgaacaatgtttatgagcgagcattggtatacatgaacaagatgcctcgt
atctggattgagttctgtacgtttatgttgaaacaacccaaactcacagttgctcgtcgt
ctatttgacagggctcttagagccttaccaatcactcaacatgtccgaatatggccatta
tatttgaaatttataaaagaaagtcatgacccagaagttgccgttaaaatatatagaaga
tatttaaaattatttccagaagattcagaagattatattgaatatttaactacttctgga
cgacttgatgaagctgccgtacgtttgtctgaaattgtcaataatgacagttttgtatcc
aaacatgggaaatccaagcatcaactttggaatgaactatgcaatttaatatcaaaaaat
cctttagaaattaaatcattaaatgttgatgcaattatacgtagtggtttaagacggtat
actgatcagcttggtcatttgtggaactctttagctgattattacatacgtagcggatta
tttgaaagagcaagagatatatatgaagaggctattcaaactgttacaacggttcgtgat
tttacacaagtttatgatgcttatgcacaatttgaagaattaagcttacaaaaacgaatg
gaagttgttcatgccaatcaaaatagtactgagaaagatgattgtgaaattgatttacgt
atggcaagattggaaaacctgattgaaagacgattactacttttaaactctgtactttta
agacaaaacccccacaatgttaaagaatggttaaaacgtgtacagctttatgaaggaaat
gacgttcaggtaataaatacttttacagaagctgtggagacagttgatcctcaaaaagca
gttggtagattgcatacactctgggttgagtttgctaaattttatgaaaaagccaaacaa
gttgaagaagcacgcttagtatttaaaaaagctgttttagtgtcatatataaaagttgag
catttagccagtgtttggtgtgaatgggtagaaatggaattaagacatgaaaactttaat
gaagcaatgagactaatgcgacaagcaacttccattccttctcggaaagtagcctatcac
gatgatactgaaactgttcaaatacgattacataaatcattaaaattatggtccttgtat
ttagatatggaagagagttttggaacggtaaagtcaacaatggcttgttatgatcgagtt
atagatttaagaattgcaactccacaaactattattaattatggattatttttagaagaa
aataactattttgaagaaatgtttaaagcttatgaaaaaggtgtagcgttattcaagtgg
ccaaatgtttttgacatatggaatacatatttaacaaaatttttggaccgttatggtggt
acaaaacttgagcgtgctcgtgatctttttgaagaatgtctagaaagttgcccgccacaa
tttgctaagtgtatttatttattgtatgcaaaacttgaagagaaacatggtttaggtaga
cgagcaatggctgtctatgaaagagccactgaagctgttctacccgaagagaagtttgaa
atgtttaacatatacattaaaaaagcagcagaaatatctggtatacctaagactagagaa
atctatatgaaagctttggaagttttaaccaacaataatgctcgtacaatgtatctgcga
tttgcagaacttgaaacaaaattaggtgaaattgatcgggctcgagccatatactcacat
tgtagtcaaatatgtgaccctagagtaactgaagaattttggcagacatggacctcattt
gaagtagctcatggtaatgaagatactctccgagaaatgttaagaattaaacgtagtgta
caagcaatgtataatatccaagtgaacatgatgtcagcacaaatgatgtctgtgatttcg
gttgaacccgaaaaaagtggaatgaagttattagaagaaaaagcattagaaaagatagaa
aaaccattggaaccaatcaaatttgttttgggcagtgaacaagaccgtttaccaaatgaa
aaagtaataaatccagatgaaattgaatttagtgatgatgaaaatgaagacgatggtgat
aaagaaaatgaagaaaacgacgacgaagatatgcctactaaaaaagatgtccctgctgaa
ttatttggtaacttaggagcatttactgaatag
DBGET
integrated database retrieval system
