Aphis gossypii (cotton aphid): 114133096
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Entry
114133096 CDS
T05869
Name
(RefSeq) ATP-dependent RNA helicase me31b
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114133096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ags03019
]
114133096
03036 Chromosome and associated proteins [BR:
ags03036
]
114133096
Enzymes [BR:
ags01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114133096
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114133096
mRNA degradation factors
5'-3' decay
Decapping complex
114133096
Chromosome and associated proteins [BR:
ags03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114133096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA
Motif
Other DBs
NCBI-GeneID:
114133096
NCBI-ProteinID:
XP_027854524
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All DBs
Position
1:complement(27124116..27132195)
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AA seq
446 aa
AA seq
DB search
MLATNHNNSGINLNMPSKQLNRISFEGIDDAGWKAKLKLPPQDHRIKTSDVTSTKGNDFE
EFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLEQVD
PKLDVIQALVIVPTRELALQTSQICIELAKHLDIRVMVTTGGTNLKDDILRIYQRVHVII
ATPGRILDLLDKSIAKVDHCRILVLDEADKLLSQDFKGMLDHIISRLPSERQILLYSATF
PLTVKQFMDKHLRSPYEINLMEELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQSIIF
CNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRKGSCRNLVCSDLFTRGIDV
QAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFALHRIEQELGTEIKPI
PKVIDPRLYVARPEDVDINEEMDLSK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctacaaatcacaataactctgggattaacctcaatatgcccagtaaacagtta
aacagaataagctttgaagggatagatgatgccggctggaaagccaagcttaaacttcct
cctcaagatcaccgcattaaaacaagtgatgtcacttcaaccaaaggaaatgattttgaa
gaattctgtttaaaacgtgaattattaatgggtatatttgaaaaaggatgggaaaaacca
agccctattcaagaagcaagtattccaatagcactttctggcaaagatatattggcaaga
gcaaaaaacggcacaggaaaaactggagcttattccatacctgtacttgaacaagtagac
ccaaaactagatgttatacaagcacttgtgattgtgccaactagagaattagcattacaa
actagtcaaatatgtattgaacttgcaaaacacttggacattagggtcatggtgactact
ggtggcactaatcttaaggatgatattcttcgtatttaccaaagagtgcatgttataatt
gccactcctggaagaatattagatctcctagacaaaagcatagctaaagttgatcattgt
cggattttagttttagatgaggcagataaactattatcacaagattttaaaggtatgtta
gatcatataatttcaaggttaccgtcagagaggcaaatccttctgtattctgccacattc
cctctgactgtcaaacaatttatggataaacatttacgtagtccatatgaaataaattta
atggaagagttaaccttgaaaggagttactcagtattatgcatttgttcaagaaaaacaa
aaggttcactgtttgaacactttgttctcaaagcttcaaataaatcaaagtataatattt
tgtaattcaacccaacgtgtggagttacttgctaaaaaaataactgatctcggctattgt
tgttattacattcatgctaaaatggcccaagcacatcgtaatcgtgtattccatgatttt
agaaaaggatcttgccgcaatcttgtttgttctgacttatttacgagaggtattgatgta
caagctgtaaatgttgtgataaactttgattttcccaaaatggcagagacgtatttgcat
cgtattggtaggtcaggccgatttggacatcttggtatagccatcaatcttatcacttat
gatgatcggtttgctttacaccgtattgaacaagaattaggcacagaaattaaacctata
cctaaggtaattgatccaaggttatatgttgcacgaccagaagatgttgatattaatgaa
gaaatggaccttagtaaatga
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