Agrobacterium sp. 33MFTa1.1: EYD00_04930
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Entry
EYD00_04930 CDS
T05906
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Pathway
agt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYD00_04930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agt03019
]
EYD00_04930
03009 Ribosome biogenesis [BR:
agt03009
]
EYD00_04930
Enzymes [BR:
agt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EYD00_04930
Messenger RNA biogenesis [BR:
agt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EYD00_04930
Ribosome biogenesis [BR:
agt03009
]
Prokaryotic type
rRNA processing factors
EYD00_04930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
QBJ12796
LinkDB
All DBs
Position
circular:complement(967134..970028)
Genome browser
AA seq
964 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDDFESADAPEPAAPMIDLSQ
VDQPDVGIVSASETTETVVTEEAAPVVEAVSEEAAVEVVAEEAPAEEEKPKKRVRRPRAK
KKTAEEIAAEAADASSEDDGSTGGEMAAMVDTDTISEEVEGLRRGNDDDDDDDDDHHEKE
VIESVGAEDAMEEVPDRVARKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSL
AGRYSVLMPNTARGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIK
RDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAK
DFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVSI
DVNSGRSTREHSIEETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKK
LKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALH
VLRGVEEYLLRNTTHNITVRCTPETALYLLNHKRGTIVDYEGRFGVSIIIAADSGVGAQH
FAIDRGEAVENPVKIESLIQMLPNFVEEEDDFVAEVEEDEDEEEIVKTESAQPRQQQQGD
NGEEGKRKRKRRRRRRGKGGQNDQNGSLEAGSGNDADGDDAEGDDDGIDTDDNGVETENG
TAEAVTSEEESKRKRRRRGKRGGRRNRAEDEALDASGAEDEGESESDEAPVTEAPVTEEA
TAAEVVEGVVADVVEEEAPKKPRRTRKAKAKTETEEAPKAEAVETVEPVIVEETVVDVAV
EEAGEASADVAPQADAPASEEKVRANRGSNVSTSEPVVTSSSPNPDGDEPKPRKGGWWQR
RGFF
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgacgcctcccacgaagaggagacacgcgtagtcgttgtc
cgtgggaaccggatcgaagaattcgattttgaatcggaacacaaaaaacagatccgcggc
aatatctaccttgccaaggtcacccgcgttgagccctccctccaggcggccttcgtggat
tacggtggaaaccgtcacggctttctcgctttcgcggaaatccatccggattattaccag
atcccgctcgctgatcgtcaggccctgctgaaagcggaagccgaggatcatcgccgcagc
gacgatttcgaatcggccgatgcgcctgagcccgccgccccgatgatcgacctttcgcag
gtggatcagccggatgtcggcattgtttccgcaagcgaaaccactgagaccgttgtgacg
gaagaagctgcacccgtcgtggaagcggtttccgaagaagcggccgtcgaagtcgtcgcg
gaagaagcgccggctgaggaagaaaagccgaagaagcgcgttcgccgcccccgcgccaag
aagaagacagccgaagaaatcgcagccgaggcggcagacgcgtcttccgaagacgatggc
agcaccggcggtgaaatggccgcgatggtcgataccgacacgatttccgaggaagtcgaa
ggtcttcgccgcggcaatgacgatgatgacgacgacgatgacgatcaccacgaaaaggaa
gtgatcgaatccgtcggcgccgaagacgccatggaagaagttccggatcgcgttgcccgc
aagccgcgcaaacaataccgcatccaggaagtcatcaagcgccgccagatccttctcgtg
caggtggccaaggaagagcgcggcaacaagggtgctgcactcaccacctatctgtcgctg
gccggccgttactccgtgctgatgccgaatacggcgcgtggcggcggtatttcccgcaag
atcacccagccgaccgaccgcaagcgtctgaaagaaatcgcgcgcgatctggaagtgccg
cagggtatgggcgtcattctgcgcaccgcaggcgccaaccgcacccgcgtcgaaatcaag
cgcgacttcgaatatctgatgcgcctgtgggaaaacgtccgcacgctgacgctgaattcc
acggctccctgcctcgtttacgaggaaggctcgctgatcaagcgttcgatccgcgatctc
tataacaaggatatcagcgagatcatcgtttccggcgaagaaggctatcgtgaagcgaaa
gacttcatgaagatgctgatgccgagccacgccaaggttgttcagccttaccgtgacatt
cacccgatcttctcgcgctccggcatcgaagcgcagctcgaccgcatgctgcagccgcag
gtgacgctgaagtcgggcggctacctcatcatcaaccagaccgaagctctggtttcgatc
gacgtcaactcgggccgttcgacacgcgagcattccatcgaggaaaccgcgctgacgacc
aacctggaagctgcggaagaagtggcacgccagctgcgtctgcgcgaccttgccggtctt
gtcgtcatcgacttcatcgacatggaagaaaagcgcaacaaccgcgccgtcgagaagaag
ctcaaggactgccttaagaacgaccgcgcccgcatccaggtcggccgcatctcgcatttc
ggtcttctggaaatgtcgcgccagcgcattcgggcttcggtgctggaatcgaccacgcag
gtctgccagcattgtggcggcacgggtcatgtgcgttcggaatcctccatcgcgctgcat
gtgctgcgtggcgtcgaggaatatctgctgcgcaacaccacccacaacatcaccgtgcgt
tgcacgccggaaacggcgctctatctgctcaaccacaagcgcggcacgattgtcgattat
gaaggccgcttcggcgtgtcgatcatcattgccgccgactccggcgtcggcgcccagcat
ttcgccatcgatcgcggtgaagccgtcgaaaatcccgtgaagatcgaaagcctcatccag
atgctgccgaacttcgtggaagaagaagacgattttgtcgccgaggtggaagaggacgaa
gacgaggaagaaatcgtcaagaccgaaagcgcccagccccgccagcagcagcagggcgac
aatggcgaagaaggcaagcgcaagcgcaagcgccgtcgccgccgtcgtggcaagggcggt
cagaacgaccagaacggctcgcttgaggccggttccggcaacgacgctgacggcgacgat
gccgagggtgatgacgacgggatcgacaccgatgacaatggcgttgagaccgaaaacggc
actgcggaagctgtaacctccgaagaggaaagcaagcgcaagcgccgtcgccgcgggaag
cgtggcggtcgccgcaatcgtgcagaggacgaagctctcgacgcttccggcgctgaggac
gaaggcgaaagcgaaagcgacgaagcgcctgtaactgaggcaccggtaaccgaagaggcg
accgcagccgaagtggtggaaggtgtcgttgccgacgtcgtggaagaggaagcaccgaag
aagccacgccgtacccgcaaggcgaaggccaagacggaaaccgaagaagcgccgaaggcc
gaagcggttgaaacggtggagccggtgatagttgaggaaaccgtcgtggatgtcgctgtt
gaagaagcaggcgaagcgtcggccgatgtcgctccgcaggcggatgcaccggcgagcgaa
gaaaaggtccgcgcgaaccggggcagcaatgtttcgacttcggagccggtggttacgtcg
tcgtctcccaatcccgatggcgatgagccgaagccgcgcaagggcggctggtggcagcgc
cgcggcttcttctga
DBGET
integrated database retrieval system
