Agrobacterium sp. 33MFTa1.1: EYD00_11475
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Entry
EYD00_11475 CDS
T05906
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agt03016
]
EYD00_11475 (thpR)
Enzymes [BR:
agt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
EYD00_11475 (thpR)
Transfer RNA biogenesis [BR:
agt03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
EYD00_11475 (thpR)
BRITE hierarchy
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Paralog
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QBJ13956
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All DBs
Position
circular:complement(2279966..2280559)
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AA seq
197 aa
AA seq
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MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEVVDRLDR
IDRPEFQLNLTGMGSFGSKKPHSIWAGVSPSPEMHALQAEIERICQRIGLPPDPRKFMPH
VTLARLRSSRVDDVVQYLSGRGNFRTSPFTVGRFVLMSSKESVGGGPYIVEEVFPLHEAR
SSSIFSSSDLHPAKSML
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgccgagactgtttaccgccctcgaaattccgcgcaatgcggcgatgagcctctcattg
ttgcgcggtggtctgccgggagcccggtggatcgatgtggagaattatcacataaccctg
cgttttatcggtgacatcgacggtcgtaccgccgatgaggtcgttgacaggctggaccgg
atagaccggccggaattccagctcaacctcaccggaatgggctccttcggctccaagaag
ccgcattccatctgggctggcgtttctccctcgcccgaaatgcatgcgctgcaggcggaa
atcgagagaatctgccaaaggatcggtctcccgcccgatccgcgcaagttcatgccccac
gtcacgctggcgcggttgcgctcctcccgcgtggacgatgtggtgcagtatctttccgga
cgcggcaacttccgcacctcaccctttacggtcgggcgctttgtgctgatgtcgtcgaag
gaatcggtgggtggcgggccctatatcgtcgaagaggtgtttccgcttcacgaggcgcgg
tccagctcgatcttttcgagcagcgatctgcatcccgctaaaagcatgttgtaa
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