Agrobacterium sp. 33MFTa1.1: EYD00_12665
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Entry
EYD00_12665 CDS
T05906
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Pathway
agt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYD00_12665 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agt03019
]
EYD00_12665 (pnp)
03016 Transfer RNA biogenesis [BR:
agt03016
]
EYD00_12665 (pnp)
Enzymes [BR:
agt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EYD00_12665 (pnp)
Messenger RNA biogenesis [BR:
agt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EYD00_12665 (pnp)
Transfer RNA biogenesis [BR:
agt03016
]
Prokaryotic type
tRNA degradation factors
EYD00_12665 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QBJ14163
LinkDB
All DBs
Position
circular:complement(2541588..2543735)
Genome browser
AA seq
715 aa
AA seq
DB search
MFNQHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH
DLENNPDILSMIATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA
GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSA
LENEMLALAEAELRDAYKITEKAARYAAVDAVKAKVKAHFLPEEGEAKYTPEEIGAVFKH
LQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG
EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE
QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS
DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMAN
AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS
SSGKEIEAARKWIHSIVAEPEVGAIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV
AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKEIVADKKKEDGEAAAE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatcaacactccgtggaaatcgaatgggcaggccgcccgctgaagctcgagacc
ggcaaggttgcccgtcaggctgatggcgccgtcatcgcaacctacggcgagaccatggtt
ctcgcgactgtggtttccgctaagtctccgaagccgggtcaggatttcttcccgctcacc
gtcaactatcaggaaaagacctacgcagccggcaagatccccggtggttacttcaagcgt
gaaggccgtccgagcgaaaacgaaacgctggtctcgcgcctgatcgaccgcccgatccgt
ccgctcttccctgaaggttacaagaacgacacccaggttgtcgtcaccgttatccagcac
gacctggaaaacaatcctgacatcctctccatgatcgccacatccgcggcgctcacgctt
tccggtgttcccttcatgggcccggttggcggcgcgcgcgttggctacatcaacggcgaa
tatgttctgaacccgcatctcgacgagatggatgagtcggttctggacctggttgttgcc
ggcacgcaggacgccgtcctgatggtggaatcggaagccaaggaactcaacgaagacgtc
atgctcggcgcggtcatgttcggtcaccgcggtttccagcccgttatcgatgcgatcatc
aagctcgccgaagttgccgccaaggaaccgcgcgaattcgaaccggaagatttttccgct
ctcgaaaacgagatgctggcactcgccgaagctgaactgcgcgacgcttacaagattacc
gaaaaggccgcccgttacgccgccgtcgacgccgtcaaggctaaggtgaaggcgcacttc
ctgccggaagaaggcgaagccaagtacacgccggaagaaatcggcgctgtcttcaagcac
cttcaggccaagattgttcgctggaacgttctcgacaccaagagccgcatcgacggccgc
gacctgtcgaccgttcgcccgatcgtttccgaagtcggcattctgccgcgcacgcacggt
tcggcgctcttcacccgcggtgaaacccaggcgatcgttgttgcgaccctcggcaccggc
gaagacgagcagtatgtcgacagcctcaccggcatgtacaaggaacgcttcctgctgcat
tacaacttcccgccctactcggtcggtgaaacaggccgcatgggctctccgggccgtcgt
gaaatcggccacggcaagctcgcatggcgcgctatccgtccgatgctgccgactgccgaa
cagttcccctacacgctgcgcgtcgtttccgaaatcaccgaatccaacggctcctcgtcg
atggcaacggtctgcggcacctcgcttgcactgatggacgcaggcgttccgcttgccaag
ccggttgccggtatcgccatgggcctcatcctcgaaggcgaccgtttcgcggttctgtcc
gacatcctcggtgacgaagaccacctcggcgacatggacttcaaggtcgcaggtacggct
gacggcatcacctcgctgcagatggacatcaagatcgccggtatcaccgaagagatcatg
aagatcgctctggagcaggcacagggtggccgcaaacacattctcggcgaaatggccaac
gccatcaccgagagccgcggtcagctcggcgaatttgcgccgcgcatcgaagtgatgaac
atcccggtcgacaagatccgtgaagtcatcggctccggcggcaaggtcattcgcgaaatc
gtcgaaaagaccggcgcgaagatcaacatcgaagacgacggcaccgtcaagatcgcttct
tcttccggcaaggaaatcgaagcggcccgcaagtggatccactccatcgttgcggaaccg
gaagtcggcgccatctatgaaggcacggttgtcaagaccgccgacttcggcgctttcgtc
aacttcttcggcgcccgtgacggcctcgtccacatctcgcagctcgcttccgagcgtgtt
gccaagacctcggacgtcgtcaaggaaggcgacaaggtctgggtcaagctgatgggcttt
gacgagcgtggcaaggttcgcctgtccatgaaggttgtcgaccaggagaccggcaaggaa
atcgttgccgacaagaagaaggaagacggtgaagccgctgccgaataa
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