Agrobacterium sp. 33MFTa1.1: EYD00_12800
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Entry
EYD00_12800 CDS
T05906
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Pathway
agt03030
DNA replication
agt03410
Base excision repair
agt03420
Nucleotide excision repair
agt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EYD00_12800 (polA)
03410 Base excision repair
EYD00_12800 (polA)
03420 Nucleotide excision repair
EYD00_12800 (polA)
03440 Homologous recombination
EYD00_12800 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agt03032
]
EYD00_12800 (polA)
03400 DNA repair and recombination proteins [BR:
agt03400
]
EYD00_12800 (polA)
Enzymes [BR:
agt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EYD00_12800 (polA)
DNA replication proteins [BR:
agt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EYD00_12800 (polA)
DNA repair and recombination proteins [BR:
agt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
EYD00_12800 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EYD00_12800 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
HHH
IMS_HHH
Transposase_20
Motif
Other DBs
NCBI-ProteinID:
QBJ14187
LinkDB
All DBs
Position
circular:2570215..2573211
Genome browser
AA seq
998 aa
AA seq
DB search
MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT
PTHFAVIFDYSSKTFRNELYDLYKANRTAPPEDLVPQFGLIREATRAFNLPCIETEGFEA
DDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGIPDVIEKWGVGPE
KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENIIANA
ELARISRQLVALRTDVPLDQPLEALVLEPQNGPKLIAFLKAMEFTTLTRRVAEATETDAS
AIESANVPVQWGADAHGPDLDATAAPAVGEAAAGVTGTAVSPAIPARKGAGEGSAPADLA
TARQTLFAAAKIDTSAYTTIRDLATLDLWVAAARETGVVAFDTETTSLDPMQAELVGFSL
AIADNGKDASGSDIRAAYIPLTHKTGSGGDLFSDGIRLAEGQVPFDEALVRLKDLLEDEA
VLKVAQNLKYDYLLMKRHGVVMQSFDDTMLISYVLEAGKATHGMDSLSERWLGHTPIPYK
DVAGSGKSSVTFDFVDIDKATAYAAEDADVTLRLWMALKPRLVSERLTKVYERLERPLVP
VLAHMEERGITVDRQILSRLSGELAQKAAAFEEEIYELAGERFNIGSPKQLGDILFGKMG
LPGGSKTKTGQWSTSAQVLEDLAAEGIELPRKIVDWRQLTKLKSTYTDALPGYIHPETKR
VHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVL
AHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLA
NQLGIARSEAGEYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPS
VKAFNERAAINAPIQGSAADIIRRAMVRIEPALEAENLSARMLLQVHDELIFEVDEAEIE
KTLPVVVSVMENAAMPAISMKVPLQVDARAADNWDEAH
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggcgatcatctcttcctcgttgacgggtccggtttcattttccgggccttc
catgccatcccgccgctgaaccgcaagtcggacgggctgccggtcaacgccgtttccggc
ttctgcaacatgttgtggaagctcctgaaggatgcgcgcaacaccgatgtcggcgtgacg
cccacgcattttgcggtaattttcgattattcatcaaagacattccgcaatgagctttat
gatctctataaagccaatcgcacggcgccgccggaagatctggtgccgcaattcgggctg
atacgggaggcgacgcgcgccttcaaccttccctgcatcgagacggaaggcttcgaggcg
gacgatatcatcgccacctatgcccggcaggcggaggccattggggccgatgtcaccatc
atctcctccgacaaggatctgatgcagctcgtcactgccaatgtccacatgtacgatgcg
atgaaggacaagcagatcggcatccctgatgtcatagagaaatggggcgtgggtcccgaa
aagatgatcgacctgcaggcgatgaccggcgattcgaccgacaatgttccgggcatcccc
ggcatcggtccaaagacggccgcgcaattgctggaagaatacggcgatctcgatacgctg
ctcgcccgtgcaggtgagatcaagcagcagaagcgtcgggaaaatatcatcgccaatgcg
gaacttgctcgtatttccagacagctcgtggcactgaggaccgacgtgccgctggatcag
ccgcttgaagcactggtgctggaacctcagaacggcccgaaactcattgccttcctgaag
gcgatggaattcaccacgctgacgcggcgggttgccgaagcgacagagaccgatgcttcc
gccattgagtccgccaatgtgccggttcagtggggcgctgacgcccatggtcccgatctc
gatgcgacggccgctccggctgtgggcgaagcggctgctggcgtaacgggcactgcggtt
tcgcccgctattccggcgcggaaaggtgccggggagggcagcgcgccggctgatcttgcc
accgcccgccagacgctttttgccgccgccaagatcgacacgagcgcctacacgacgatc
agggatcttgcgacgctggacctctgggttgcggcggcgcgggaaacgggggtcgtcgcc
ttcgatacggaaacgacatcgcttgatccgatgcaggcggaactcgtcgggttttcgctg
gcaatcgccgataatggcaaggatgcctcgggcagcgatatacgcgccgcctacattccc
ttgacgcacaagactggctccggcggcgatctattcagcgatggtatcaggctcgccgaa
ggccaggtgccctttgacgaagcactggtccgtctcaaggacttgcttgaagacgaggcc
gtgctgaaggtcgcgcaaaatctcaaatatgactatctgctcatgaaacgccatggcgtc
gtcatgcagagtttcgacgatacgatgctgatctcctatgtgcttgaggctggcaaagcg
acgcacggcatggattcgctgtccgaacgttggctcggccatacgccgatcccctataag
gacgtggcgggatcgggcaagtcgagcgttaccttcgattttgtcgacatcgacaaggcg
acggcatatgcagcggaggacgctgacgtcaccttgcggctgtggatggcgctgaagccg
cggcttgtttcagaacggctgaccaaggtttacgagcggctggaacgtccgcttgtgcct
gttctggcgcatatggaggagcgtggcatcaccgtcgaccggcaaatcctctcacgtctt
tccggcgaactcgcccagaaggcggcagcgtttgaagaggaaatctacgagctggccggc
gagcgtttcaacatcggctcgccaaagcagctcggcgacatcctgttcggcaagatgggc
ctgccgggcggctccaagaccaagaccggccaatggtcgacttcggcacaggtgctggag
gatttggcggctgaaggtattgaactgccccgcaagatcgtcgactggcggcagctgacg
aagctgaaatccacctatacggatgcactgccgggatatatccacccggagacgaaacgt
gtgcatacatcctatgcgctggcctccaccacaacaggccgtctgtcgtcctcggaaccg
aaccttcagaacatccccgtccgcacggcggaagggcgaaaaatccgcacggctttcatc
tcgacgcccggccacaagcttctttccgccgactacagccagatcgaactgcgcgtgctg
gcccatgtcgccgatattccgcagcttcgcaacgccttcgaaaacggcatcgacattcat
gccatgacggcttcggaaatgtttggtgtgcctgtcgaaggcatgccctcggaagtgcgc
cgccgcgccaaggccatcaatttcggcattatctacggtatttcggctttcggtctcgcc
aaccagctcggtatcgcccggtctgaagccggcgaatatatcaagaaatatttcgagcgt
tttcccggcatccgcgactacatggaggcgacaaaggctttcgcccgtgagaacggttat
gtcgagacgattttcggccgccgcgcccattatccggaaatccgctcgtccaacccttcc
gtgaaagccttcaacgagcgcgccgccattaacgcgccgatccagggctccgcggcggat
atcatacggcgcgccatggtccgtatcgaaccggcgctggaggctgaaaacctgtccgcc
cgcatgctgttgcaggtgcatgacgaactcatcttcgaggtcgatgaagcggaaatcgag
aaaactctgcccgtcgtcgtctctgtcatggaaaatgcggccatgccggcaatctccatg
aaggtgccattgcaggtggatgcccgcgcggctgacaactgggacgaggcgcattga
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