Agrobacterium sp. 33MFTa1.1: EYD00_19480
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Entry
EYD00_19480 CDS
T05906
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agt03032
]
EYD00_19480
03400 DNA repair and recombination proteins [BR:
agt03400
]
EYD00_19480
Enzymes [BR:
agt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EYD00_19480
DNA replication proteins [BR:
agt03032
]
Prokaryotic type
DNA Topoisomerases
EYD00_19480
DNA repair and recombination proteins [BR:
agt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EYD00_19480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QBJ15616
LinkDB
All DBs
Position
linear:complement(1229149..1230165)
Genome browser
AA seq
338 aa
AA seq
DB search
MPQPPTRLLAKIGLAYVSDQEPGISREKRGRGFCYRLPGGELLCDSDELKRIKSLGVPPA
YKDVWICIDPSGHLQATGFDARGRKQYRYHPDWHTLRGETKFFQLKSFGRALPAIRRRAM
ADVGKQDHGQEMTLAALTLLLDAAYLRVGNRSYLESNGTYGATTLLKRHVSFGETIELRF
AAKGGQKVKRQLRHPRLQKILEEIADLPGKELFVWQDSENRVHSVDSSDLNAYLSRIGGQ
GISAKTFRTWGGTLAAFCNAMEHVAAGEKPSIKGMCQAAATELSNTPAICRKSYVHPAVL
DIATEEKAQKKLSRILKVGAKPVSGLRADERRLLAFLP
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgccacagccgccaacccgccttcttgccaaaatcggacttgcctatgtcagtgatcag
gaaccgggtatttcccgcgaaaaacgcggacgcggtttctgttaccggctgccgggcggc
gaactcctctgcgatagtgatgagctgaagcgcatcaaatcgctcggtgtaccgcccgcg
tataaggatgtctggatctgcatcgacccgtcggggcatctgcaggccaccgggtttgat
gcccgcggccgaaagcaatatcgttatcatcccgactggcatacgctcaggggagaaacg
aagttcttccagctcaaaagcttcggaagggcgctccctgccatccgccgtcgcgccatg
gccgacgtcggtaaacaggaccatgggcaggaaatgacgcttgcagccctcaccctgttg
cttgatgccgcctatttgcgcgtcggaaatcgctcctatcttgagagtaacggcacctat
ggcgcaacgacattgctcaagcggcacgtttcgttcggtgaaaccatcgaattgcgcttc
gccgccaaaggcgggcaaaaggtgaaacggcaattacgccacccccgcctccagaaaatt
cttgaagagatcgccgatctgcccggcaaggaactcttcgtctggcaggatagtgaaaac
cgggttcactccgtcgattccagcgatctcaacgcatatctctcacgcatcggcggccag
ggcatttccgccaagaccttccgcacctggggcggaacgctcgcggccttctgcaacgcc
atggagcatgtggcagccggtgaaaaaccgagcataaaaggcatgtgccaggctgcggcg
accgagctttccaatacgcctgccatctgccgcaagagctatgtgcaccccgctgttctc
gatatcgccacggaggaaaaggcccagaaaaagctcagccgcatcttgaaggtcggggca
aaacccgtctccggcctcagggcggacgaaagacgcctgctggcctttttaccctga
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