Acinetobacter guillouiae: AS4_20570
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Entry
AS4_20570 CDS
T06251
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agu
Acinetobacter guillouiae
Pathway
agu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AS4_20570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agu03400
]
AS4_20570 (mfd)
Enzymes [BR:
agu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AS4_20570 (mfd)
DNA repair and recombination proteins [BR:
agu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AS4_20570 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAP36997
LinkDB
All DBs
Position
2208727..2212212
Genome browser
AA seq
1161 aa
AA seq
DB search
MSFRPYAIMFKQEISDLNLKQLKAGEKRWIGTMLGSSAALLFKEIAEKSDQLFVLVAKNN
QHLGQLESELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLSILSNMPQKGILLVSATT
LAQRVAPTSWVLGEHFDIRVGQKFALEQQKLKLVQAGYHLVDTVYDHGEFAVRGSIMDIY
ASGQNAPIRIDLFDDEIDSLKFFDPETQRTTTKLERFTVLPAKEFPLKEARSTFRDRYAE
SFPTANPKKNPIYQDVLEGIASPGLDFYFPLFFSQQAMQTQSCLVSYLPSNAIVITDKHI
DEGLLSFWTDVMRRYEDRRHNADQPLLPPEEIFIQPNQLFEYLNQFSRIIASTEAIELKA
GCINLSVELPPRLPVDPKQDQPFKAVKQYVDEANHPVLLVAESAGRRETLKDALRASLGE
IPVVEGFAVFQQSNFSVAITNAPLDRGLVISNDLSVISENQLYEHRVVQRRRKRQQEVSE
EFLIRSLTELNIGAPVVHIDHGVGRYAGLVTLNIDEQDYEFLQLNYADDAKVYVPVTNLH
LISRFSGGDPDLAPLHKLGTDAWNKAKRKALEQIHDVAAELLHIQARRQSKPGISFELDQ
SAYMQFSSGFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQ
NNRQVAVLVPTTLLAQQHFESFKDRFADWPIRIEVLSRFGTNKSHTKTIDDLIDGKVDIV
IGTHKILQENVQFKNLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAF
GGMRDLSIIATPPARRLAVKTFVNEQTNETMKEAILRELLRGGQVYILHNEVDTIERAAE
NIRQLVPEARVAVAHGQMRERELEQIMQQFYHKEFNVLVCSTIIETGIDVPNANTIIIER
ADKLGLAQLHQLRGRVGRSHHQAYAYLMVPSIKGLKGDAEKRLDAIQRASNLGAGFMLAT
EDLEIRGAGELLGEQQSGSMNAIGYSLYMEMLAKATKAIQQGKTPNFDTPLSLTSEITLH
MPALIPDEYLGDVHQRLMFYKRISNTDTQDKLDNIRMELIDRFGVPPLPVKQLFSVHQIR
VKAEALEITKIDIGANGGVIEFSPDTPVQAISIIQLMQKHPTWFRMEGGQRLKVMVMLEE
NDKRIQFIQDLLNNLLTELKR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttagaccttatgcgattatgtttaaacaagaaatctctgacctcaatttaaaa
caactgaaagctggcgaaaaacgttggattggcacaatgctaggttcatctgcagcctta
ttgtttaaggagatcgcagagaaatcggatcagctctttgtattggttgcaaaaaataat
cagcacttgggacagttggaaagtgaattagaattttatggggtaaaaccaacaatattt
ccagactgggagatattgccatatgatcgtttatctccgcaccaagatattgtctctgaa
agactgtcgatactttccaatatgccacaaaaaggtattttattggtctctgcaactacc
ttggcacaacgtgttgcccctacatcatgggtgttgggtgagcattttgatatccgcgtt
ggtcagaaattcgcattagaacaacaaaaattaaaactggttcaggcgggttatcatctg
gttgataccgtttatgaccatggtgagtttgcagtacgtggtagcatcatggatatttat
gcctctgggcaaaatgcgcctatccgtattgatttatttgatgatgaaatagacagttta
aaattctttgaccctgaaacccaaagaacaacaacaaagttagagcgttttaccgtactt
cctgcaaaagaatttccgttaaaagaagcacgttcaacatttcgtgatcgttatgcagaa
agttttccaactgcaaatcccaagaaaaacccaatttatcaagatgtgttagaaggcatt
gcttctccaggattagatttctacttcccattattcttttcacagcaagccatgcaaaca
caaagttgtttggtatcgtacttaccaagcaatgcgattgtcattacagataagcacatt
gacgaaggattgttgagtttttggacagatgtgatgcgtcgttacgaagaccgacgccat
aatgctgatcaaccgctattaccacctgaagaaatttttatacaaccgaatcaactgttt
gagtatttaaatcaattttcaagaattattgcctcaacagaagccattgaattaaaagca
ggctgtatcaatttgtcggttgaattgccgccacgattgcctgtagaccctaaacaagac
caaccatttaaagcagtgaagcagtatgtggatgaggctaatcatcctgtattactggtg
gctgaaagtgctggacgccgtgaaactttaaaagatgctttacgtgcaagtttaggtgaa
attccagttgttgaaggttttgctgtatttcagcaatctaatttctctgtcgcgattacc
aatgcgcctttggatcgtggattggtcatcagcaatgatctatcggttatttctgaaaac
caattgtatgaacaccgtgtagtacagcgccgcagaaaacgtcaacaagaggtttcagaa
gagtttctgatccgaagtctgacggaactcaatattggtgcgccagtggtgcatattgat
catggcgttgggcgttatgcaggtttagtcaccttaaatattgatgaacaagactatgag
tttctgcaattaaactatgcagatgatgcaaaagtgtatgttcctgtgaccaatctacac
ctgattagccgttttagtggaggtgatcctgatttagcgccattacataaattgggtaca
gatgcatggaataaagcaaaacgtaaagcgcttgaacagattcatgatgtggcagctgaa
ttactacatatccaagcacgtcgtcagtcgaaacccgggattagctttgagctggatcaa
agtgcatatatgcaattttccagtggttttgcttatgaggaaacattggatcaggccaat
gccatcgaagcgaccttatatgatatgcaacaagccaaaccaatggatcgattggtttgt
ggtgatgttggctttggtaaaacggaagtggcgatgcgcgcggcatttgttgctgttcaa
aataataggcaagtggctgttttagtccctaccaccttattggcgcaacaacattttgaa
tcatttaaagatcgctttgccgattggccaattcgtatagaggtactttcgcgttttgga
accaataaaagtcataccaaaaccattgatgatttaatcgatggtaaagttgatattgtc
atcggcacacataaaattcttcaggaaaatgtgcagtttaaaaacttaggtctaatgatt
gttgatgaagaacatcgttttggggtacgtgataaagagcgtatcaaagccatgcgtgca
gatgttgatatgttaaccttaactgcaacaccaattcctcgtaccttgaatatggctttt
ggcggaatgcgtgatctttcaattattgctacaccgccagcacgtcgtttagctgtcaaa
acttttgtcaatgaacaaaccaatgaaaccatgaaagaggcaattctgcgagaattgtta
cgtggtggtcaggtttatatcttgcacaatgaagtagataccatagaacgcgctgcagaa
aatattcgtcaacttgtaccagaggcacgtgtcgcggttgcgcatggtcaaatgcgtgaa
cgtgaacttgagcaaatcatgcaacagttctatcacaaagaatttaacgtactggtctgt
tcaacaattattgaaacggggattgatgttcctaatgccaatacgattattattgaacgt
gcagacaaactcggcctagcacaattacatcaattacgtggtcgtgttggacgttcccat
catcaagcctatgcatatttgatggtgccatcgattaaaggccttaaaggtgatgccgaa
aaacgtttagatgccattcaaagagcttcaaatcttggcgctggctttatgctggctacg
gaagacttagagattcgtggtgcgggtgaactactgggtgaacaacaaagtggttcaatg
aatgcaattggctatagcttatatatggaaatgttagccaaagcgaccaaagcaattcaa
cagggcaagacgcctaattttgatacaccactttcacttacttctgaaattaccctgcat
atgcctgctttgatcccagatgaatatttgggagatgtacatcagcgtcttatgttctat
aaacgtattagtaatactgatactcaggataaacttgataatatccgtatggagctgatt
gatcgctttggtgtgccgccattaccagtaaaacaactgtttagtgttcatcaaattcgg
gttaaggccgaagccttagaaattaccaaaattgatattggggctaatggtggggtgatc
gaattttcacctgatacacctgtgcaagcgatcagtattattcagctcatgcagaagcat
ccaacttggttccgtatggaaggtggacaacgtttaaaagtgatggtgatgcttgaagaa
aatgacaagcgaattcagtttattcaggatttgttaaacaatttactgacagaattaaag
cgttaa
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integrated database retrieval system
