Aquisphaera giovannonii: OJF2_17410
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Entry
OJF2_17410 CDS
T06184
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
agv
Aquisphaera giovannonii
Pathway
agv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJF2_17410 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agv03019
]
OJF2_17410 (cshA_1)
03009 Ribosome biogenesis [BR:
agv03009
]
OJF2_17410 (cshA_1)
Enzymes [BR:
agv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OJF2_17410 (cshA_1)
Messenger RNA biogenesis [BR:
agv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OJF2_17410 (cshA_1)
Ribosome biogenesis [BR:
agv03009
]
Prokaryotic type
rRNA helicases
OJF2_17410 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
CMS1
DUF1363
Motif
Other DBs
NCBI-ProteinID:
QEH33241
UniProt:
A0A5B9VZ32
LinkDB
All DBs
Position
complement(2362447..2363631)
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AA seq
394 aa
AA seq
DB search
MGLSATMLKALARARYVKPSPIQSEFIPLALDGLDVLGQAKTGTGKTAAFGIPLIEMMEA
RSRGPQAIILAPTRELVQQIVGELQKLAEGRDVAICGIYGGEPIERQLRALARGVDIVVG
TPGRVMDHMERRTLYLGDIVHVVLDEADRMLDIGFRPDIERILRKVPDPHQTMLLSATIS
DDVRKLAGRYMYHPVEVNLSTDEPSVESIQQYYISVNHDRKVELLVHLLKRDKPRQCIVF
TRTKRGADRLAERLRRVIPGVASIHGDLAQSARDRVMRGFRDKSIPVLVATDVVGRGIDV
EGISHVINYDIPDDPENYVHRIGRTGRMGKDGIAYLFVGPDQGEPLTLIENLINKVIPSH
KVEGFEVARARSAAPAARELYNNVGGLPREMAVR
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgagcgcgacgatgctcaaggccctggcccgcgcccgctatgtgaagccctcg
cccatccagtccgagttcatccccctggcgctcgatggcctcgacgtcctggggcaggca
aagacgggcaccgggaagacggccgcgttcggcatccccctcatcgagatgatggaggcc
cgctcgcggggcccgcaggccatcatcctcgccccgacccgcgagctcgtccagcagatc
gtcggtgagctgcagaagctggccgaggggcgcgacgtcgccatctgcgggatctacggc
ggcgagcccatcgagcgtcagctccgcgcgctcgcccgcggcgtcgacatcgtcgtcggc
acccccggccgcgtcatggaccacatggaacgtcgcaccctctacctcggcgacatcgtc
cacgtggtcctcgatgaggccgatcgcatgctcgacatcgggttccggcccgacatcgag
cggatcctgcggaaggtgcccgatccgcatcagaccatgctgctgtctgccaccatcagc
gacgacgtccgcaagctggccggccgctacatgtaccacccggtcgaggtgaatctgtcc
acggacgagccctcggtcgagtcgatccagcagtactacatctcggtgaaccacgaccgg
aaggtcgagttgctggtgcacctgctgaagcgggacaagccgcggcagtgcatcgtcttc
acgcggacgaagcgcggggcagaccgcctcgccgagcggctccgccgagtcatcccgggc
gtcgcctcgatccacggcgacctcgcccagtcggcccgcgaccgcgtcatgcggggcttc
cgcgacaagagcatccccgtcctggtcgccaccgacgtcgtcggccgaggcatcgacgtc
gaggggatcagccacgtcatcaactacgacatccccgacgacccggagaactacgtccac
cgcatcggccgcaccggccgcatggggaaggacggcatcgcctatctgttcgtcgggccc
gatcagggcgagcccctcacgctgatcgagaacctcatcaacaaggtgatcccgtcccac
aaggtcgagggcttcgaggtcgcccgagcgcggtccgccgcgcccgccgcccgcgagctg
tacaacaacgtcggcggcctccctcgcgagatggccgtccgctga
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