Aquisphaera giovannonii: OJF2_20240
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Entry
OJF2_20240 CDS
T06184
Symbol
mfd_1
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agv
Aquisphaera giovannonii
Pathway
agv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OJF2_20240 (mfd_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agv03400
]
OJF2_20240 (mfd_1)
Enzymes [BR:
agv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OJF2_20240 (mfd_1)
DNA repair and recombination proteins [BR:
agv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OJF2_20240 (mfd_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEH33522
UniProt:
A0A5B9VYZ1
LinkDB
All DBs
Position
complement(2767005..2770313)
Genome browser
AA seq
1102 aa
AA seq
DB search
MPRTSARKTPAVSRISPAAVEVAPAGIGDLKDLTRQVQRAEGFPEVLAALKNGRAATVDG
AWGSAAGLVSAALGLHAPTTLVVVLAHNGDVDDFRDDMAVFAGVTPEVFPAWEKLPREQD
ATDEVSGRRLRVLNRLSGTMPPRLVITTIQALLQPVPGPEILGSMSRRVAVGETIPVEEL
AGWLLDRGMQRAEVVEVPGEFSLRGGILDVYPSDANDPVRIEFFGDEVESIRPFDAESQR
SLDRWDHVTLTIPPSFDDKALSGFVPPSDYFPEGTWVALLELPDIREEGKNYLGRLDDAR
GLYSVESVMARLTRLPTIAVSALSADSLEATCHLRIESVERFSGDLAKVKAELDGAAAGE
RVLIACHNAAEVERLGEVFADTELARQGRLARALGRIRAGFHLIDASTLVIADHELFARA
DIRRPVTRRRYESRAIDSFLDLNEGDLVVHINHGIARYLGLHFVDRSSDHAEETLLLEFA
EGTKLYVPIAKIDLVQKYVGGGKAAPPLSKIGASSWEKRKKRVEEAVVDLAQELLDINAQ
RASQPGFAYPREDSHWMAEFEAAFPFEETPDQLAAIEATKRDMAETKPMDRLICGDVGYG
KTEIAIRAAFKAVDAGKQAAVLVPTTILAEQHHRSFSARMGEFPFNVEVVNRFRPRAEIR
EVLKRTAQGGVDILIGTHRILQKDVTFKDLGLVVIDEEQRFGVEDKEWLKTFRSTVDVLT
LSATPIPRTLHMSLLGIRDISNLETPPPDRKAIETKILRFDAETIRKAIHRELNRDGQVY
FVHNRIHDIHRVAERIQQIVPEARICIGHGQMGGEALERTMLDFIRRKYDILLATTIIES
GLDIPNVNTIFINEADKYGLADLHQLRGRVGRFKHRAYAYLLLESDRPVTPNAVKRLKAI
EEFTSLGAGFKIALRDLEIRGAGNILGPEQSGHIESVGYELYCSMLETAVRSLTKQPEKP
LFDCSVELKWRAFLPKDYVAGARVKLELYRRLARLRSLDHLADFRKELGDRFGPIPRPGE
NLLAEAELRILAGNWRLERIHIEAEYVVLTYRDRKKIEALARRHPGRVRIVDEKHAYVPL
GDDPLKPAEIATVVRSLLSTRA
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgccaaggacgtccgcacgaaaaaccccggccgtgtcccggatctcgccggctgccgtc
gaggtcgcgccggccgggatcggcgacctgaaggacctcactcgtcaggtccagcgtgcc
gagggattcccggaggtcctggccgcgctcaagaacggccgggcggccacggtggacggg
gcctgggggtctgcggccggcctggtctcggccgccctgggattgcatgctcctacgacc
ctcgtcgtcgtgctcgcccataatggggacgtggacgatttccgcgacgacatggccgtc
ttcgcgggcgtcactccggaggtgttccccgcctgggagaagctcccgcgcgaacaggac
gccaccgacgaggtctccggccggcggctccgcgtgctcaatcgtctctccggcacgatg
cccccgcggctcgtcatcacgaccatccaggccctcctccagcccgtgcccgggccggag
atcctcgggagcatgtcgcggcgggtcgccgtcggcgagacgatccccgtcgaggagctg
gccggatggctcctcgaccgggggatgcagcgggccgaggtcgtggaagtgcccggcgaa
ttcagcctgcgcggcgggatcctggacgtctacccgagcgacgccaacgacccggtccgc
atcgagttcttcggcgacgaggtggagtccatccgtcccttcgacgccgaatcccagcgc
tcgctcgaccgctgggatcacgtcacgctgaccatcccgcccagcttcgacgacaaggcg
ctatccgggttcgtccctccgagcgactacttccccgaggggacctgggtcgcactcctg
gagctgccggacatccgcgaggagggcaagaattacctgggccggctggacgacgcgcgc
gggctctactcggtcgagagtgtgatggcccggctgacccgcctgccgacgatcgccgtc
tccgcgctctcggccgactcgctcgaggcgacctgccatctgaggatcgagagcgtcgag
cggttctccggggacctcgcgaaggtgaaggccgagctggacggcgcggccgcgggcgag
cgggtgctgatcgcctgccacaacgccgccgaggtcgagcgcctgggcgaggtcttcgcc
gacaccgagctggcccgccaggggcggctcgcgcgggccctcgggcggatccgggccggc
ttccacctgatcgacgcctcgaccctggtcatcgccgaccatgagctcttcgcccgcgcg
gacatccgccgcccggtcacgcggcgtcgctacgagagccgggcgatcgacagcttcctg
gacctcaacgagggcgacctggtcgtccacatcaaccacgggatcgcgcggtatctcggc
ctccacttcgtcgatcggtcttccgaccacgctgaggagaccctgctcctggagttcgcc
gaggggacgaagctgtacgtgccgatcgccaagatcgacctcgtgcagaagtacgtcggc
ggcggcaaggcggcgcctccgctctccaagatcggcgcctcgtcgtgggagaagcggaag
aagcgcgtggaagaggcggtagtcgacctcgcgcaggagctgctggacatcaacgcccag
cgggcgagccagccgggcttcgcctacccccgcgaggacagccactggatggccgagttc
gaggccgccttcccgttcgaggagacgccggaccagctcgccgccatcgaggcgacgaag
cgcgacatggccgagacgaagccgatggaccggctcatctgcggcgacgtcgggtacggc
aagaccgagatcgccatccgggccgcgttcaaggccgtggacgccggcaagcaggcggcg
gtcctcgtcccgacgacgatcctcgcggagcagcaccaccggagcttctcggcccgcatg
ggcgagttccccttcaacgtcgaggtcgtcaaccgatttcgcccccgcgcggagatccgc
gaggtcctcaagcggaccgcccagggcggcgtggacatcctcatcgggacgcaccggatc
ctccagaaggacgtcacgttcaaggacctgggcctggtcgtcatcgacgaggagcagcgg
ttcggcgtcgaggacaaggagtggctgaagacgttccgctccaccgtggacgtcctcacc
ctctccgccacgccgatcccccggacgctgcacatgagcctgctcgggatccgcgacatc
tccaacctcgagaccccgccgccggaccgcaaggccatcgagacgaagatcctccgcttc
gacgccgagacgatccgcaaggcgatccaccgcgagctgaaccgggacggccaggtctac
ttcgtgcacaaccggatccacgacatccaccgggtcgccgagcggatccagcagatcgtc
cccgaggcgcggatctgcatcggccacggccagatggggggcgaggcgctcgagcggacc
atgctcgacttcatccgccgcaagtacgacatcctcctggccaccacgatcatcgagagc
ggcctcgacatccccaacgtgaacaccatcttcatcaacgaggccgacaagtacgggctg
gccgacctgcaccagctccgcggccgcgtgggccggttcaagcatcgggcctatgcgtac
ctgctcctcgagtcggaccgcccggtgacccccaacgcggtcaagcggctcaaggcgatc
gaggagttcacgtcgctcggggcgggattcaagatcgcgctccgcgacctggagatccgg
ggcgcggggaacatcctggggccggaacagtccgggcacatcgagagcgtcggctacgag
ctctactgctcgatgctcgagacggccgtccgctcgctgacgaagcagcccgagaagccc
ctcttcgactgctccgtggagctgaagtggcgggccttcctgcccaaggattacgtcgcg
ggcgcccgcgtgaagctggagctgtatcgccggcttgcccgcctccgcagcctggaccac
ctggccgacttccggaaggagctcggcgaccgcttcgggccgatcccgaggcccggcgag
aacctgctggcggaggccgagctgcggatcctcgccggcaactggcggctggaacggatc
cacatcgaggcggagtatgtcgtcctcacttatcgggaccggaagaagatcgaggccctg
gcacgccgacacccgggccgggtccggatcgtcgacgagaagcatgcgtacgtccccctc
ggcgacgatccgctgaagccggccgagatcgcgaccgtcgtccgctcgctgctgagcacg
cgtgcctga
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integrated database retrieval system
