Aquisphaera giovannonii: OJF2_20510
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Entry
OJF2_20510 CDS
T06184
Symbol
cshA_2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
agv
Aquisphaera giovannonii
Pathway
agv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJF2_20510 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agv03019
]
OJF2_20510 (cshA_2)
03009 Ribosome biogenesis [BR:
agv03009
]
OJF2_20510 (cshA_2)
Enzymes [BR:
agv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OJF2_20510 (cshA_2)
Messenger RNA biogenesis [BR:
agv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OJF2_20510 (cshA_2)
Ribosome biogenesis [BR:
agv03009
]
Prokaryotic type
rRNA helicases
OJF2_20510 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
WSD
Motif
Other DBs
NCBI-ProteinID:
QEH33549
UniProt:
A0A5B9VZY0
LinkDB
All DBs
Position
2804994..2806697
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AA seq
567 aa
AA seq
DB search
MAQRASAAAVPGFNSLGLDDRLVEALGALGYEEPTPIQREAIPPLLEKKDLIGQAATGTG
KTAAFALPLLHLLAGREGKGGGPFALVLVPTRELAMQVAEAVHKYGRALRASVLPIYGGQ
AYGPQLRALQRGADVVIATPGRALDLAKGGKLKLDSVEVVVLDEADEMLDMGFAEDIEAI
LHETPAERQTVLFSATLPPRIAAIARRHLTDPVKIKIAAEQAVAGTTAKVRQTAYIVPRG
HKLATLARVLDVENPTSAIVFCRRRNEVDELAESLSVRGYRVEALHGGMTQDQRTRVMKK
FRGEASDLLIATDVAARGLDIQHLSHVINYDVPAEPESYVHRIGRVGRAGREGVAITLAE
PREHRQLRSLEHATGQKIEIAKVPTIADMRARRLELTRASIREAIVAGELDRYRVVVETL
AGEFDVVDVAMAAVKLLHQSDSNGEQDADEIPDVEIWDRPRRDDRPRPGNPRDGRGRPAR
GGGEGRGDMSKIYVGAGRAAGIRPQDLVGAITNEAGLTGGQVGGIDIADRFSLVEVPEDL
VESVIAALRSTKLKGRKVTVRRDRAAE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggctcagagggcttcggcggcggcggtacctggtttcaactccctgggcctggacgac
cgcctggtggaagccctcggggcgctcggctacgaggagccgacgccgatccagcgcgag
gcgataccgcccctcctggagaagaaggacctcatcggccaggcggcgaccgggacgggc
aagacggcggcgttcgcgctccccctgctgcacctcctggccggtcgcgagggcaagggc
ggaggcccgttcgccctcgtcctcgtgcccacacgcgagctggcgatgcaggtcgccgag
gcggtccacaaatacggccgggccctccgggcgagcgtcctgcccatctatggcggccag
gcctacggcccccagctcagggccctgcagcgcggggccgacgtggtcatcgccaccccg
gggcgggccctcgacctcgccaagggcgggaaactcaagctcgattccgtcgaggtcgtc
gtcctcgacgaggcggacgagatgctcgacatgggcttcgccgaggacatcgaggcgatc
ctccacgagacgcccgcggagcgccagacggtcctgttctcggccacgctcccgcccagg
atcgccgccatcgcgcggcggcacctgaccgacccggtcaagatcaagatcgccgccgag
caggccgtggccgggacgacggcgaaggtccgccagaccgcctacatcgtgcctcgcggc
cacaagctggccaccctcgcccgcgtgctcgacgtcgagaatccgacctcggcgatcgtc
ttctgccggcgtcgcaacgaggtggacgagctggcggagagcctgagcgtccgcggatat
cgcgtcgaggccctccacggcggcatgacgcaggaccagcgcacccgggtgatgaagaag
ttccgcggcgaggcatccgacctgctgatcgccaccgacgtcgccgcccgcggcctggac
atccagcacctgtcccacgtgatcaactacgacgtgcccgccgagcccgagtcgtacgtc
caccggatcggccgcgtcggccgggcagggcgggagggcgtggccatcacgctggccgag
ccgcgcgagcatcgccagctccgctcgctcgagcacgccaccggccagaagatcgagatt
gccaaggtccccacgatcgccgacatgcgtgcccgccgcctggagctcacgagggcgtcg
atccgcgaggccatcgtggccggcgagctggaccgatatcgcgtcgtcgtcgagactctg
gccggcgagttcgacgtggtggacgtcgccatggcggccgtcaagctcctgcatcaatcc
gacagcaacggcgagcaggacgcggacgagatccccgacgtcgagatctgggatcgtccc
cgccgcgacgaccgcccccgcccgggcaatccgcgcgacggcaggggccgccccgcgcgg
ggcggtggcgaggggcggggggacatgagcaagatatacgtcggagccggccgcgccgcc
ggcatccggccccaggatctcgtgggggcgatcaccaatgaggcgggcctgaccggcggc
caggtgggcggcatcgacatcgccgaccgcttctcgctcgtcgaggtgccggaggacctc
gtcgaatccgtcatcgccgcccttcgctccaccaagctaaagggccgcaaggtgaccgtc
cgccgcgatcgggccgcggaataa
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