Aquisphaera giovannonii: OJF2_46370
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Entry
OJF2_46370 CDS
T06184
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
agv
Aquisphaera giovannonii
Pathway
agv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJF2_46370 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agv03019
]
OJF2_46370 (rne)
03009 Ribosome biogenesis [BR:
agv03009
]
OJF2_46370 (rne)
Enzymes [BR:
agv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OJF2_46370 (rne)
Messenger RNA biogenesis [BR:
agv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OJF2_46370 (rne)
Ribosome biogenesis [BR:
agv03009
]
Prokaryotic type
rRNA processing factors
OJF2_46370 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QEH36077
UniProt:
A0A5B9W6W1
LinkDB
All DBs
Position
complement(6179165..6182416)
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AA seq
1083 aa
AA seq
DB search
MKKEMLINVLQPEECRIAIVENGVLEELYVERTSHESYTGNIYKGKVVNLEPAIQAAFVD
FSVGRNGFLHVSDVEPQYYQGAASAEDEPEPGAAQLPAPGARPREPRRDREDRRRPRPDA
FGEPLPPSLPPPRSEDRPPRDRDRDRDRERPDRSIRGRRDRSEAPRSFGEGLADELGPLP
QPPRAPEPPRPEPREPAAERREEVERASWTEAVERGWEYEREREREREAAPEEPAEGRWR
SARPADFFDPDLPPSRTQRSRLPQPPAAEAEAPERGRYRPAEPPEAEPPREARDEEEIES
FAPREPRRDRGRGRGRPSPPAGRPPRAPSAFDAEDLEAPDERAAAAPIEDEPDAFEPGPR
ADEPRRRGGRAAIRSRGAEGERDRDRDRERPREREAAPPEPAPAPPRYARPQPEHEPERV
RPAEPAEPPRERARPHARAGEPGYVPRRERLRAADPSPEAAPDAFAWPEAARDDVPDIES
REFLGADDEPFGPPEAAADARGEGRDGKRRRRRRGRRRDRDRIDEPGSPAQDEFAAELDD
EAAEADFGPSFGRDADEEDVRRAGVRELDIEEIDEIEEVAGLDVDIDDHEDLLHDDDLAD
APRVAEEEIDPELEQEIRKEIEEIEALEREMGLRGPAEARPRREDAAGRGGRAGRGRGAS
KPPIQEIFRRGDEVLVQVIKESIGTKGPTLSTYISIPGRYLVLMPGLNRVGVSRKIVDEG
QRRKLREIMHELNPPKGLGFIVRTAGLERSKRELARDLAYLLRLWKVILRRIKKTRTPGA
IYQESDMITRTIRDIFTSEIDTIWIDEPAAFERAQEFLRVVMPRFVNRIKLYEEKVPLFH
KYGIEDEIAKIQRRHVPLPEGGSIVIDQTEALVAIDVNSGNFRVEDDAEKTAYEMNLRAA
REIARQLRLRDLGGVIVNDFIDMREERHRRGVERALREAIKRDRARTKILRMSAFGLIEM
TRQRIRPSLKRSVYEDCPNCTGSGVVKTAESMAIDVMRLLALASHREEIRRINVTVSSSV
ATYLNNRKRKEIARIEADSNMTIQVGFKENVAAEHLHLDCYDANNTEIRLAPLPPPGHGK
RGH
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaatgctgatcaacgtcctccagcccgaggaatgccgcatcgccatcgtc
gagaacggcgtgctggaggagctgtacgtcgagcgcaccagccacgagagctacacgggg
aacatctacaagggcaaggtcgtgaacctcgagccggcgatccaggccgcgttcgtggac
ttctcggtcggccgcaacgggttcctccacgtctccgacgtcgagccgcagtattaccag
ggggccgcctccgccgaggacgagccggagcccggcgcggcccagctcccggccccgggc
gcccgcccgcgcgagccgcgccgcgaccgcgaggaccggcggcggcccaggccggacgcc
ttcggcgagccgctccccccgtcgctcccgccgccccgctccgaggatcgcccgcccagg
gaccgcgaccgggaccgggaccgggagcgcccggaccgctcgatccgcggccgccgcgac
cggtccgaggcgccgcggtccttcggggaagggctcgccgacgagctggggccgctgccc
cagccgcctcgggcccccgagcccccgcgccccgagccgcgcgagccggccgccgagagg
cgcgaggaggtcgagcgggcctcgtggaccgaggccgtggagcgcggctgggaatatgag
cgggagagggagcgggagcgggaggccgcgccggaggagcccgccgaggggcgatggcga
tcggcccgccccgccgacttcttcgacccggacctgccccccagccggacgcaacggtcg
cggctcccgcagcccccggccgccgaggccgaggccccggagcgggggcggtatcgcccg
gccgagcccccggaggccgagccgccccgcgaggcccgcgacgaggaggagatcgagtcc
ttcgcccccagggagccgcgccgcgatcgcggccggggccgcggccggccctcgccgccg
gccggacgccccccccgggcgccctcggccttcgacgccgaggacctggaggccccggac
gagcgggccgcggcggccccgatcgaggacgagccggacgccttcgagcccgggcccagg
gccgacgagccccgccgccgcggcggccgcgcggcgatccgctcccgcggcgccgagggc
gagcgggaccgcgaccgcgatcgggagaggccgagggagcgagaggcggccccgccggag
cccgcccccgccccgccgcggtacgcccggccccagccggagcacgagcccgagcgcgtg
cggcccgccgagccggcggagcccccccgcgagcgggccaggccccacgcccgcgccggg
gagcccggctacgtcccccgccgcgagcggctgagggcggccgacccgtcccccgaggcc
gcgccggacgccttcgcctggcccgaggcggcccgggacgacgtcccggacatcgagtcc
cgcgagttcctgggcgccgacgacgagccgttcggcccgcccgaggcggccgccgacgcc
cgcggcgagggccgcgacggcaagcgacggcggcgtcgacgcggccgccggcgcgaccgc
gaccggatcgatgagccgggctcgcccgcccaggatgaattcgccgccgagctcgacgac
gaggccgccgaggccgacttcggcccctccttcggccgcgacgcggacgaggaggacgtc
cgccgcgccggggtccgcgagctcgacatcgaggagatcgacgagatcgaggaggtcgcc
ggcctcgacgtcgacatcgacgaccacgaggacctgctccacgacgacgacctggccgac
gcgccccgggtcgccgaggaggagatcgaccccgagctcgagcaggagatccgcaaggag
atcgaggagatcgaggccctcgagcgggagatgggcctccgcgggcccgccgaggctcgc
ccccgacgcgaggacgccgccgggcgcggcggccgggccggccgcgggcggggcgcctcc
aagcccccgatccaggagatcttccgccgcggcgacgaggtcctcgtccaggtcatcaag
gagagcatcggcaccaagggcccgaccctctccacctacatcagcatccccggccgctac
ctggtgctcatgccgggcctgaaccgcgtcggcgtctcccgcaagatcgtcgacgagggc
cagcgccgcaagctccgcgagatcatgcacgagctgaacccgcccaaggggctcggcttc
atcgtccgcaccgccggcctggagcgatccaagcgggagctcgcccgcgacctcgcctac
ctgctgcggctctggaaggtgatcctccggcggatcaagaagacccggaccccgggcgcc
atctaccaggaatcggacatgatcacccggaccatccgggacatcttcacgtccgagatc
gacaccatctggatcgacgagccggccgccttcgagcgggcccaggagttcctccgggtg
gtcatgccccggttcgtcaaccggatcaagctgtacgaagagaaggtgccgctgttccac
aagtacggcatcgaggacgagatcgccaagatccagcggcggcacgtcccgctgccggag
ggcggctccatcgtcatcgaccagaccgaggccctcgtggccatcgacgtcaactcgggc
aacttccgcgtggaggacgacgccgagaagaccgcctacgagatgaacctccgcgccgcc
cgcgagatcgcccgccagctgcggctccgcgacctcggcggcgtcatcgtcaacgacttc
atcgacatgcgcgaggagcggcaccgccgcggcgtcgagcgggccctccgcgaggcgatc
aagcgcgaccgcgcgaggaccaagatcctccgcatgagcgccttcggcctcatcgagatg
acccgccagcggatccgccccagcctcaagcggtcggtctacgaggactgccccaactgc
accggctccggcgtcgtcaagacggccgagagcatggccatcgacgtcatgcggctgctg
gcgctggcctcgcaccgcgaggagatccgccgcatcaacgtcaccgtcagctcgagcgtg
gcgacctacctgaacaaccgcaagcggaaggagatcgcccgcatcgaggccgattccaac
atgaccatccaggtcggcttcaaggagaacgtggcggccgagcacctgcacctcgactgc
tacgacgccaacaacaccgagatccggctggcgcccctgcccccgccgggccacggcaag
cggggccactga
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