Agreia sp. COWG: AGREI_1386
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Entry
AGREI_1386 CDS
T07018
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
agx
Agreia sp. COWG
Pathway
agx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGREI_1386 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agx03019
]
AGREI_1386 (deaD)
03009 Ribosome biogenesis [BR:
agx03009
]
AGREI_1386 (deaD)
Enzymes [BR:
agx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AGREI_1386 (deaD)
Messenger RNA biogenesis [BR:
agx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AGREI_1386 (deaD)
Ribosome biogenesis [BR:
agx03009
]
Prokaryotic type
rRNA helicases
AGREI_1386 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
HEM4
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAD5997211
LinkDB
All DBs
Position
COWG:complement(1357001..1358818)
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AA seq
605 aa
AA seq
DB search
MASSTTTGPNEADTAPAEQTFIELGLADAVLKALKDVGYETPSAIQAATIPPLLAGRDVV
GLAQTGTGKTAAFALPILSRLDLSQKTPQALVLAPTRELALQVCEAFEKYAAHLRGVHVL
PVYGGQGYGVQLSALRRGVHIVVGTPGRIMDHLEKGTLDLSQLKYLVLDEADEMLKMGFA
EDVETILADTPEDKQVALFSATMPAQIRRISAKYLHDPEEITVKNKTTTSVNTTQRYLVV
SYPQKVDALTRILETENFEGMIVFTRTKNETETLAEKLRARGYSAAAINGDIVQAQRERT
VNQLKSGKLDILVATDVAARGLDVERISHVVNFDIPIDTESYVHRIGRTGRAGRTGDAIS
FVTPRERRMLVAIEKATRQPLTEMKLPSVDDVNATRLTRFDDAITAALSQPEQIQQFRDI
VGHYVQHHDVPEADVAAALAVVAQGDTPLLLDPEPVRNTRFERDSRERPERGDRPDRYRD
DRPARAERGTHGDKWERPDRADRPERSQRSSGPKTTYRIAVGKRQKVEPRQIVGAIANEG
GLNRGDFGAIQIRPDFSLVELPADLPGDVLDRLQNTRISGKLIELTPDRAGNSAKREDRP
RYGRD
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggcatcctctacaaccaccggcccgaacgaggccgacaccgctcccgccgagcagacc
ttcatagaactcggactcgctgacgcggtgctcaaggcactcaaggacgtcggctacgag
accccttcggccatccaggccgcgaccatccccccgcttctcgccggccgcgacgtcgtg
ggcctcgcccagaccggaacaggcaagacggcggcattcgccctgcccatcctctcccgg
ctcgacctctcgcagaagaccccgcaggccctcgtactcgccccgacccgcgagctggcg
ctccaggtctgcgaggcattcgagaagtacgctgcccaccttcgcggcgtgcatgtgctg
cccgtctacggcggccagggatacggcgttcagctctccgcactgcgtcgcggcgtgcac
atcgtcgtcggcacccccggccgcatcatggaccacctcgagaagggcaccctcgacctc
tcccagctgaagtacctggttctcgacgaggccgacgagatgctcaagatgggcttcgcc
gaagacgtcgagacgatcctcgccgacacccccgaagacaagcaggtcgccctgttctcg
gcgacgatgccggcgcagatccggcggatctccgccaagtacctgcacgaccccgaagag
atcacggtcaagaacaagaccacgacgtcggtcaacaccacccagcgctacctcgtggtg
tcctatccgcagaaggtcgacgcgctgacgcgcatcctcgagaccgagaacttcgagggc
atgatcgtcttcacccgcacgaagaacgagacagagacgctggccgagaagctgcgcgct
cgcgggtactcggcggccgccatcaacggcgacatcgtgcaggcccagcgggagcgcacc
gtgaaccagctcaagtcgggcaagctcgatattctcgtggccaccgacgtggcggcccgc
ggcctcgatgtggaacgcatcagccacgtggtcaacttcgacatcccgatcgacaccgag
tcctatgttcaccgcatcggtcgaaccggccgcgccgggcgcacgggcgacgcgatcagc
ttcgtcacgccgcgcgagcgccgcatgctcgtcgcaatcgagaaggcgacgcgccaaccc
ctcacagagatgaagcttccgagcgtcgacgacgtgaacgccacacgcctgacccggttc
gacgacgccatcaccgcggcgctgagccagcccgagcagatccagcagttccgagacatc
gtcggtcactacgtgcaacaccacgacgtgcccgaggccgatgtcgctgcggcgctggcc
gtcgtcgcccagggcgacacacctctgttgctcgaccccgagcccgtgcgcaatactcgc
ttcgagcgagacagtagggagcgcccggagcgcggagaccggccggaccgctatcgcgac
gaccgaccggccagggcggagcgaggaacacacggagacaagtgggagcgccctgaccgt
gcagatcgacccgagcgttcgcagcgcagctcgggccccaagacgacctatcgcatcgca
gtcggtaagcgacagaaagtcgaacccaggcagatcgtcggcgctatcgccaacgagggc
ggtctgaacaggggagacttcggcgccatccagattcggcccgacttctctctcgtcgaa
ctgcccgcagatctgcccggtgacgttctcgaccgactgcagaacacgcgcatcagcgga
aagctgatcgaattgacgccggatcgcgcggggaactcggccaagcgcgaggatcgaccg
cggtacgggcgcgactga
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