KEGG   Agreia sp. COWG: AGREI_2463
Entry
AGREI_2463        CDS       T07018                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase (beta subunit)
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
agx  Agreia sp. COWG
Pathway
agx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:agx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AGREI_2463 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:agx03021]
    AGREI_2463 (rpoB)
   03400 DNA repair and recombination proteins [BR:agx03400]
    AGREI_2463 (rpoB)
Enzymes [BR:agx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AGREI_2463 (rpoB)
Transcription machinery [BR:agx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AGREI_2463 (rpoB)
DNA repair and recombination proteins [BR:agx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AGREI_2463 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: CAD6004803
LinkDB
Position
COWG:complement(2443258..2446746)
AA seq 1162 aa
MAAARNATTNSPKTGRNASRLSFAKITDTLTVPDLLALQTESFDWLVGNDIWKERVAEAK
KAGRQDLANNSGLEEIFEEISPIEDLGETMQLSFTAPFLEPEKYTIDECKERGKTYAAPL
YVEAEFMNHQTGEIKTQTVFMGDFPLMTERGTFIINGTERVVVSQLVRSPGVYFERAQEK
TSDKDIYSSRIIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILSEFK
GYASIEATLEKDTILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNSKRYDLAKVGR
YKINRKLGIESALSNSVLTTEDIIATIKYLVALHDNQTTIPGTREGKKVDIRLDVDDIDH
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRRVVDGVVTATIDYLTASEEDEYIVAQANAPLTSDA
RFAEPRVLARRKGGEVDLFPAEDIGYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLLRSESPLVGTGMEGYAAIDAGDVVTTLKAGVVSEVSADVVTIQLDEGGTQDYYL
RKFDRSNQGTSYNHRVIVSEGERVEVGQVLADGPATENGELALGKNLLVAFMPWEGYNFE
DAMILSQNLVKDDVLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTIIAVKE
FSAENDDELGSGVNQRVVVYIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLADGTP
VDIVLNPLGIPGRMNFGQVLETHLGWIAKQGWEVEGKPKWAAELPEQARQAAPNTKVATP
VFDGAFEEEIAGLLDSTTKTRDGDRLIGSSGKARLFDGRSGEPYPEPISVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
ILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVSLRDTDDEVF
RAAEELGINISTRFESSSIDDI
NT seq 3489 nt   +upstreamnt  +downstreamnt
ttggctgctgcgcgcaacgcaaccaccaactcacccaagaccgggagaaacgcatcgcgt
ctctcgttcgcgaagatcacagacactctgacggtcccggatctgctcgctctgcagacc
gagagcttcgactggctcgtcggaaacgacatctggaaagagcgcgtcgccgaggcgaag
aaggccggtcgtcaagacctggccaacaactcgggactcgaagagatcttcgaggagatc
tctccgatcgaagacctcggcgagacgatgcagctgagcttcaccgctccgttcctcgag
cccgagaagtacacgatcgacgagtgcaaggagcgcggcaagacctacgcggctcccctc
tatgtcgaggccgagttcatgaaccaccagaccggtgagatcaagacccagaccgtcttc
atgggtgacttcccgctgatgaccgagcgtggaacgttcatcatcaacggcaccgagcgt
gtcgtcgtgtcgcagctcgtccgcagcccgggcgtctacttcgagcgcgcccaggagaag
acctccgacaaggacatctactcctcgcgcatcatcccgagccgtggtgcctggctcgag
ttcgagatcgacaagcgcgaccaggtcggtgtgcgcatcgaccgcaagcgcaagcagagc
gtcaccgtcttcctcaaggccctcggcctcacgagcgaagagatcctctcggagttcaag
ggctacgcctcgatcgaggccaccctcgaaaaggacacgatcctcacgaaggaagaggcg
ctcaaggacatctaccgcaagctgcgtccgggcgagcaggttgccgccgaggccgcgcgt
gcgctgctcgacaacttctacttcaactcgaagcggtatgacctggcgaaggtcggtcgg
tacaagatcaaccgcaagctcggcatcgagagcgcgctgagcaactcggttctcaccacc
gaggacatcatcgccacgatcaagtacctggtcgccctccacgacaaccagaccacgatc
cccggaacccgcgagggcaagaaggtcgacatccggctcgacgtcgacgacatcgaccac
ttcggaaaccgtcgcatccgcgccgtgggcgagctcattcagaaccaggtgcgcaccgga
ctctcccgcatggagcgcgtcgttcgcgagcgcatgaccacgcaggacatcgaggcgatc
acgccgcagaccctgatcaacgtgcgccccgtcgtcgccgcgatcaaggagttcttcgga
accagccagctgtcgcagttcatggaccagaacaaccccctcgcgggactgacgcacaag
cgtcgcctctctgcgctgggcccgggtggtctgagccgcgagcgcgccggcgtcgaggtg
cgagacgtccacccctcgcactatggccgcatgtgcccgatcgagaccccggaaggcccg
aacatcggcctgatcggctcgctggcatcattcgcgcgcatcaactcgttcggtttcatc
gagaccccctaccgtcgcgtcgtcgacggcgtggtcacggcgaccatcgactacctgacc
gcgagcgaagaagacgagtacatcgtcgcccaggcgaacgcgccgctcaccagcgatgcc
cgcttcgccgagccccgcgtcctcgcccgccgcaagggcggagaggtcgacctgttcccg
gccgaagacatcggctacatggatgtctcgccgcgccagatggtgtcggtcgcgaccagc
ctcatcccgttcctcgagcacgacgatgcgaaccgcgccctcatgggtgcgaacatgcag
cgccaggccgttccgctcttgcgcagcgagagcccgctcgtcggtaccggtatggagggc
tacgccgccatcgacgcgggtgacgtcgtcaccacgctgaaggccggtgtcgtctccgag
gtgtcggcagacgtcgtcaccatccagctcgacgagggcggaacccaggactactacctg
cgcaagttcgaccgctcgaaccagggcacgagctacaaccaccgcgtcatcgtctccgag
ggtgagcgggtagaggtcggccaggttctggccgatggtcctgccaccgagaacggcgag
ctcgcgctcggaaagaacctgctcgtggcattcatgccatgggagggctacaacttcgaa
gacgcgatgatcctgagccagaacctggtgaaagacgacgtgctctcctcgatccacatc
gaggagtacgaggtcgacgcgcgcgacaccaagctgggtaaagaggagatcacccgtgac
ctccccaacgtctcgcccgagctgctcgcagacctcgacgagcgcggcatcatccgcatc
ggtgccgaggtgcgccccggcgacatcctcgtgggcaaggtcacgccgaagggcgagacc
gagctttctgccgaggagcgcctgctgcgcgccatcttcaacgagaagagccgcgaggtt
cgtgacacgtccctgaaggtgccccacggcgagcagggaacgatcatcgccgtcaaggag
ttctcggcagagaacgacgacgagctcggttcgggtgtcaaccagcgtgttgtggtctac
atcgcccagaagcgcaagatcaccgagggcgacaagctcgccggtcgtcacggtaacaag
ggcgtcatctccaagatcctcccggtcgaagacatgccgttcctggcagacggcacgccc
gtcgacatcgtgctgaacccgctgggtattcctggacgaatgaacttcggccaggttctc
gagacccacctcggctggatcgccaagcagggctgggaggtcgaaggcaagcccaagtgg
gcagccgagctgccagaacaggcccgccaggccgccccgaacaccaaggtcgcgaccccg
gtgttcgacggtgcttttgaagaggagatcgccggtctgctcgattcgaccaccaagacc
cgtgatggcgaccgcctgatcggatcgtctggaaaggcccgtctcttcgacggccgctcc
ggcgagccgtacccggagccaatctccgtcggttacatgtacatcctgaagctgcaccac
ctcgtcgacgacaagatccacgctcgctcgacgggtccgtactccatgatcacgcagcag
ccgctgggtggtaaggcgcagttcggtggacagcgtttcggtgagatggaggtctgggcc
ctcgaggcctatggagccgcgtacgcgctccaggagcttctgaccatcaagtccgacgac
atcctcggccgtgtgaaggtctacgaggcgatcgtcaagggcgagaacatccaggagccc
ggtattcccgagagcttcaaggtgctcatcaaggagatgcagtcgctgtgtctgaacgtc
gaggttctctcggccgacggaacagcagtgagcctgcgcgacacggatgacgaggtcttc
cgtgccgccgaggaactcggcatcaacatctccacccggttcgagtcgtcgtcgatcgac
gacatctag

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