Agromyces aureus: ATC03_02335
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Entry
ATC03_02335 CDS
T04413
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
agy
Agromyces aureus
Pathway
agy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATC03_02335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agy03019
]
ATC03_02335
03009 Ribosome biogenesis [BR:
agy03009
]
ATC03_02335
Enzymes [BR:
agy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATC03_02335
Messenger RNA biogenesis [BR:
agy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATC03_02335
Ribosome biogenesis [BR:
agy03009
]
Prokaryotic type
rRNA helicases
ATC03_02335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
HEM4
adh_short
RepB_primase_C
P-loop_SecA
Cas3-like_C_2
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANJ25770
UniProt:
A0A191WBY6
LinkDB
All DBs
Position
544363..546342
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AA seq
659 aa
AA seq
DB search
MTSGENPVVAEAPAEPAAISFADLGLDGAVLKALSDVGYETPSAIQAATIPTLLAGRDVV
GLAQTGTGKTAAFALPILARLDESQKTPQALVLAPTRELALQVCEAFEKYASRMRGVHIL
PVYGGQGYGVQLSALRRGVHIVVGTPGRIMDHLEKGTLDLSQLKYLVLDEADEMLKMGFA
EDVETILADTPADKQVALFSATMPSAIRRISKQYLNDPEEITVKTKTTTSATITQRYLVV
AHQQKIDALTRILEVENFEGMIVFVRTKSVTEEIAEKLRARGYSAAAINGDIAQAQRERT
VNQLKSGKLDILVATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAIS
FATPRERRLISAIEKATRQELTQMQLPSVDDVNVTRLSRFDDSITAALAQSERIDGFRDI
IGHYMKHHDVPEVDVAAALAVVAQGEAPLLLDPAAERPARGWNERDDRGARNDRDRDDRR
GDRDGGSRGGRYDDDRGGDRRSRGGPQLATYRIAVGRRHKVEPRQIVGALANEGGLRRED
FGAIQIRPDFSLVELPADLPRETLERLDGTRISGRLIELRPDRGAPQRRDGAPRRSYGDR
DDKPRRSYGDRDDKPRRSYDDKPPRSYDDKPARSSDDNAAAADADGPARKPRHKGSRDE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccggcgaaaaccccgtcgtggccgaggctcccgcagagcccgccgcgatcagc
ttcgccgacctcggactcgacggcgccgtactcaaggccctctccgacgtcggctacgag
accccctcggccattcaggccgccaccattccgaccctcctcgcggggcgcgacgtcgtg
ggcctggcccagaccggcaccggcaagacggccgccttcgcgctgccgatcctcgcgcga
ctcgacgagtcgcagaagacgccgcaggccctcgtgctcgcccccacgcgcgagctcgcc
ctgcaggtctgcgaggcgttcgagaagtacgcgtcgcgcatgcgcggcgtgcacatcctg
cccgtctacggcggtcaaggctacggcgtgcagctctcggccctgcgccgcggcgtgcac
atcgtcgtcggcacgcccggtcgcatcatggaccacctcgagaagggcacgctcgacctc
tcgcagctcaagtacctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgcc
gaagacgtcgagacgatcctcgccgacacccccgccgacaagcaggtcgcgctgttctcg
gccacgatgccgtcggcgatccgccgcatctcgaagcagtacctgaacgaccccgaagag
atcacggtcaagaccaagaccacgacctcggcgacgatcacgcagcgctacctcgtcgtc
gcgcaccagcagaagatcgacgccctcacgcgcatcctcgaggtcgagaacttcgagggc
atgatcgtcttcgtgcgcacgaagagcgtcactgaagaaatcgccgagaagctccgtgcc
cgcggctattcggctgcggccatcaacggcgacatcgcccaggcccagcgcgagcgcacc
gtcaaccagttgaagtcgggcaagctcgacatcctggtggcaacggatgtcgcggcccgc
ggcctcgacgtcgagcgcatcagccacgtcgtgaacttcgacatcccgaccgacaccgag
tcgtacgtgcaccgcatcggccgcaccggccgggccggccgctccggcgacgcgatcagc
ttcgcgaccccccgcgagcgccgcctcatctcggcgatcgagaaggcgacgcgccaggag
ctgacccagatgcagctcccgagcgtcgacgacgtcaacgtcacccgactctcgcgcttc
gacgacagcatcacggccgcgctcgcgcagagcgagcgcatcgacgggttccgcgacatc
atcggccactacatgaagcaccacgacgtgccagaggtcgacgtggccgccgcgctcgcc
gtggtcgcccagggcgaggcgccgctgctgctcgaccccgcggccgagcgccctgcgcgt
ggttggaacgagcgcgacgaccgcggtgcccgcaacgaccgcgaccgtgacgaccgtcgc
ggcgaccgcgacggcggctcgcgcggcggtcggtacgacgacgaccgcggcggcgaccgt
cgctcgcgcggcggcccccagctcgcgacctaccgcatcgccgtcgggcgccgccacaag
gtcgagccccgtcagatcgtgggcgcgctcgccaacgagggcggccttcgtcgtgaagac
ttcggtgcgatccagatccgccccgacttctcgctcgtcgagctgccggccgacctgccc
cgcgagacgctcgagcgcctcgacggcacgcgcatcagcggtcgcctgatcgagctgcgt
cccgaccgcggcgccccccagcgccgtgacggcgcaccccgccgctcgtacggtgaccgc
gacgacaagccccgccgctcgtacggcgaccgcgacgacaagccgcgccgctcgtacgac
gacaagcccccgcgttcgtacgacgacaagccggcgcgctcgagcgacgacaacgcagcc
gcggccgatgccgacggcccggcgcgcaagccgcgccacaagggctcccgcgacgagtag
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