Acinetobacter gyllenbergii: FPL18_05330
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Entry
FPL18_05330 CDS
T08262
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agyl
Acinetobacter gyllenbergii
Pathway
agyl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agyl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FPL18_05330 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agyl03021
]
FPL18_05330 (rpoC)
03400 DNA repair and recombination proteins [BR:
agyl03400
]
FPL18_05330 (rpoC)
Enzymes [BR:
agyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FPL18_05330 (rpoC)
Transcription machinery [BR:
agyl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FPL18_05330 (rpoC)
DNA repair and recombination proteins [BR:
agyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FPL18_05330 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QHH93304
LinkDB
All DBs
Position
complement(1153575..1157768)
Genome browser
AA seq
1397 aa
AA seq
DB search
MKDLLDIMRKKTDSEGHAPVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW
FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFEKYQLLTDEEYYNALEEHGDE
FTAKMGAEAVQDLLKDIDLEAEIARLREEIPQTTSETKLKKASKRLKLMEAFKDSNNKPE
WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
TVGPTLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLASV
IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCAAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNR
ALATGKVAIHARVKVRVHQTVIDENGNREKQTIIVDTTPGRCLLWEVVPQGLSFESINLE
MTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMLIPPTKHTIID
KAETEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSYTLVKNKQGEDEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDLVITESDCGTAGGLVMTPFIQGGDVIEPL
RDRVLGRVTAEDVRRASDDEVVLPRGTLIDEKIAAQLEEAGVDEVKVRSVIACESTFGVC
ARCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK
GTVRFHNVKTVQHAKGHLVSVSRSGEIGIADDLGRERERYKLPYGASILLKDGEAVEAGG
IVATWDPHTHPLVTEVAGKARFSQIADGVTATSKTDDATGMTTVEILPVTARPASGKDLR
PAIVLDTTDGGEQFYFLPQNTIVTVRDGETIGVGDVIGRVPQETSRTRDITGGLPRVADL
FEARKPKEHAILAEVSGVVSFGKETKGKNRLVITPDDGSEIYEELIPKWRQINVFEGEHV
NRGETISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVVVRQMLRKV
DITDGGDTSFIKGEQVDYIRVVQENQAVLAQNKFPAKFERQLMGITKASLSTDSFISAAS
FQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLERRRQEAEAAEFELHND
FSEVDQAFSQALNSDQF
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctcgatatcatgcgtaagaaaacggattcagaaggtcatgcacccgtt
gaatttgaccgtatccgtattggtcttgcgtcaccagagatgattaagtcatggtctcac
ggtgaagttaaaaagcctgaaaccattaactaccgtacttttaaacctgaacgtgacggt
ttgttctgtgccaaaatctttggtccagtaaaagattacgaatgcttgtgtggtaaatac
aagcgtatgaaatacaaaggcgtcatttgtgaaaaatgtggcgttgaagtaacgactgcg
aaagttcgtcgtgaacgtatgggtcacatcgagcttgcgtctccagttgcacacatctgg
ttcttgaaatcattaccgagccgtatcggtttacttcttgatatgacattacgtgatatc
gagcgcgtattgtatttcgaatcttatgtggttactgatcctggaatgactccgtttgaa
aagtatcaacttttaacagacgaagaatactacaatgcacttgaagaacacggtgatgaa
ttcactgcgaaaatgggtgcagaagcagttcaggatttattaaaagatatcgatcttgaa
gccgagattgcacgtttacgtgaagaaattccacaaacaacctctgagacgaaacttaaa
aaagcgtctaagcgtttgaaattgatggaagctttcaaagattcgaacaacaagcctgaa
tggatggtgatgaacgtacttccagtacttccaccagacttacgtccgcttgtaccactt
gaaggtggtcgtttcgcgacttcagacttgaacgatttatatcgtcgtgtgatcaaccgt
aacaaccgtttgaagcgtcttcttgaccttgctgcgccagatatcatcgtacgtaacgaa
aaacgtatgttacaagagtctgttgatgcgttgcttgataacggtcgtcgtggtcgtgcg
attacaggttcgaacaaacgtccattgaaatctttggcagacatgatcaaaggtaaacaa
ggtcgtttccgtcaaaacttgctcggtaagcgtgttgactattctggtcgttcggtgatt
acagtaggtcctactttacgtcttcaccaatgtggtcttccgaagaaaatggcacttgaa
ttgttcaagccattcattttcgcaaaactacaagcctctggccaagcaacaaccattaaa
gctgcgaagaaaatggttgagcgcgagacaccggaagtttgggacgttcttgcttctgtg
attcgtcaacatccagtcatgttgaaccgtgcgccaacacttcaccgtctaggtcttcaa
gcatttgaacctattctgatcgaaggtaaggcaatccgtcttcacccactcgtttgtgct
gcgtttaacgccgacttcgatggtgaccaaatggcggtacacgttccattgacattggaa
gcacagcttgaagcacgtgcgttgatgatgtcgaccaacaacatcttgtcacctgcaaac
ggtgagccgatcatcgttccttctcaggacgttgtcttgggtctttactacatcacacgt
gatgcggtaaatgccaaaggtgaaggcatggtgtttgcggatacgcacgaagttaaccgt
gcgttagcgacgggtaaagttgcaatccatgcgcgcgtaaaagtacgtgtacaccaaact
gtgattgatgaaaacggtaaccgtgaaaagcaaaccatcattgttgatacgacacctggt
cgttgcttgttatgggaagttgttccacaaggtttaagcttcgaatcgatcaaccttgag
atgaccaagaaaaacatctcgaagttaatcaactcttgctaccgtaaacttggtttgaaa
gatacggttatcttcgctgaccaattgatgtatttgggcttccgtcaagcgacgcgttca
ggtgtatctgttggtatggaagacatgttgattccaccaaccaagcatacgattatcgat
aaagctgaaacagaagttcgtgaaatcgaacaacagtttgagcaaggtttcgtaactgcg
ggtgagcgttataacaaagttgtcgatatttgggcgcgtactaacgaccaagttgcgaaa
gcgatgatggataacttgtcttatacccttgtgaaaaacaaacaaggtgaagacgagaaa
cagaaatcattcaactcgatttatatgatgtctgactcgggtgcccgtggtagtgcggcg
cagatccgtcagcttgctggtatgcgtggtttgatggcgaagccggatggctcgatcatt
gagaccccaattaaagcaaacttccgtgaaggtttgacggtacttcagtacttcatctcg
acacacggtgcgcgtaaaggtttggccgataccgcattgaaaactgcgaactctggttac
ttgacacgtcgtcttgtagacgtagcacaagatttggttattactgaatctgactgtggt
acagccggtggcttggtgatgactccattcattcaaggtggtgacgtgatcgaaccatta
cgtgatcgcgtattgggtcgtgtaactgctgaagatgtacgtcgtgcatctgatgatgaa
gtggttcttccacgtggtaccttgattgacgagaaaattgctgctcagcttgaagaagcg
ggtgtcgatgaggttaaagtacgttcagttatcgcttgtgaatcaacattcggtgtatgt
gcgcgttgttatggtcgtgaccttgcacgtggtcacttggtgaacccaggtgaatcagtg
ggtgtaatggctgcacaatcaattggtgagccaggtacacagttaacgatgcgtaccttc
cacgtgggtggtgctgcgagccgaacttctgctgcaaacagtgttcaagtacgtaacaaa
ggtactgtacgtttccacaacgtgaaaactgtacaacatgccaaaggtcacttggtctct
gtttcacgttcaggtgaaattggtattgccgatgacttaggtcgtgagcgcgagcgttat
aaacttccttacggtgcaagcatcttgttgaaagatggtgaagctgtagaagcgggcggt
atcgtagcgacttgggatccgcatacacatccattggtcacagaagttgcgggtaaagcg
cgtttcagccagatcgctgatggcgtaactgcaacatcgaaaactgatgatgcaacaggt
atgaccactgttgaaatcttgcctgtaacagctcgtcctgcttctggtaaagatttacgt
cctgcaattgtgttggatacaaccgatggcggcgaacagttctacttcttgccacaaaac
acaatcgtgacggttcgtgatggcgaaacgattggtgtgggtgacgttattggtcgtgta
ccacaagaaacttcacgtactcgtgatattaccggtggtcttccgcgtgtagctgacttg
ttcgaagcacgtaaaccgaaagaacatgcaatccttgcagaagtatcaggtgttgtcagc
ttcggtaaagagactaaaggtaagaaccgtttagtgatcactccagatgacggttcagag
atctacgaagagttgattccaaaatggcgtcaaatcaacgtgtttgaaggtgagcatgtc
aaccgtggtgagaccatttctgatggtccacaaaacccacatgacatcttacgcttgaaa
ggcgaagtggcattgaccaactacatcgtgaacgaagttcaagacgtttaccgtctccaa
ggtgtaaaaatcaatgataagcacattgaagttgttgtacgtcaaatgttgcgtaaagtt
gatatcactgatggcggcgatacaagcttcatcaaaggcgagcaagtggattacatccgc
gttgttcaagagaaccaagcggtcttggctcagaacaagttccctgcgaagtttgaacgt
caattgatgggtattaccaaagcgtcgctttctactgactcgttcatctctgctgcatcg
ttccaggaaaccacacgtgtgttaactgaagcggctgtaacaggtaaagaagatgattta
cgtggcttgaaagaaaacgttgttgtgggtcgtttgatcccggcaggtacaggtcttgcg
tatcatttagagcgtcgtcgtcaagaagcggaagctgctgaatttgaacttcataacgat
ttcagtgaagttgaccaagcatttagtcaagcgttgaactcggaccagttctaa
DBGET
integrated database retrieval system
