Acinetobacter gyllenbergii: FPL18_14115
Help
Entry
FPL18_14115 CDS
T08262
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agyl
Acinetobacter gyllenbergii
Pathway
agyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FPL18_14115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agyl03400
]
FPL18_14115
Enzymes [BR:
agyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPL18_14115
DNA repair and recombination proteins [BR:
agyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FPL18_14115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QHH94875
LinkDB
All DBs
Position
3036465..3039923
Genome browser
AA seq
1152 aa
AA seq
DB search
MFQQEISQLNLQQFKAGEKRWVGSLLGSSAALLFKEIATQNSNLYVIIARNNQHLAQLES
ELEFYGIKPVIFPDWEILPYDRLSPHQDIVSERLAILSNMPQKGILLVSASTLAQRVAPY
SWVVGEHFDIKVGQKLDLEAQKKQLVQAGYRLVDTVYDHGEFAVRGSIMDIFASGQDQPI
RIDLFDDEIESLKFFDPETQRTTESLKNFTVLPAKEFPLKEGRSTFRDRYAESFPTANPK
KNPIYQDVLEGIATPGLEFYLPLFFDKKVMEAQSMLTTYLPNNCVVITNNEIEDDLINFW
KEVMRRYEDRRHNIDQPILPPEELFLMPNHVLQALNQFPRILASAEALETKAGVLNIAAE
EPPKLAVDPKKEQPFQAVKHYIDQAKHPVLLVAESAGRRETLKDALRGVLGEIQNVDTFA
QFQKDKLQVAITSAPLDRGLLLTNQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLEIDEQDHEFLQLDYADGAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDTWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDHTGYMQFSS
GFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADTAVRIEVLSRFGSNKTHLKTIEDLAEGKVDIVVGTHKILQ
ENIQFKNLGLMIVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDDSVKEAILRELLRGGQVYLLHNEVDTIERAAESIRNLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDSQEKLDNIRMELIDRFGIPPQPVKQLFSVHQLRLRAEQLGI
TKIDINSNGGYIEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVTVQLAEYDKRIQFI
VDLLNKLLSELN
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattaaacttacaacaattcaaagcgggtgaaaaacgc
tgggtcggttccttacttggatcatcagctgcattattatttaaagaaattgccactcaa
aattcgaatctgtatgtgattattgcaaggaataatcaacatcttgcccagcttgaaagc
gaacttgaattttacggaatcaaacctgtcatttttcccgattgggaaattctgccttat
gaccgcttgtctccacatcaagacattgtttcggaacgtctggcaattttatcgaatatg
ccacaaaaaggcatattattggtttctgccagtaccttagcgcaacgcgttgcaccttat
tcatgggtcgtgggcgaacactttgatattaaagtcgggcagaagctagacctcgaagca
caaaagaaacaattggttcaagcaggctaccgtttagttgacacggtttatgatcatggt
gaatttgcagttcgcggtagcatcatggatattttcgcatctggacaagatcaaccgatt
cgaattgatttatttgatgatgaaattgaaagtctaaaattctttgacccagaaacccaa
agaaccacggaatccttaaaaaactttactgttttacctgcaaaagaatttccactcaaa
gaagggcgttctacctttagagaccgttatgcagaaagcttcccaactgcaaatccaaag
aaaaatccgatttatcaggatgtattagagggaattgcaacgccaggtttagagttttat
ttgccattattctttgataagaaggtgatggaagcgcagagtatgctaacaacatactta
ccaaataattgcgttgtcattacaaataatgagattgaagatgatttaatcaacttctgg
aaagaagtgatgcgtcgttatgaagatcgacgtcataacattgatcaacccattctgccg
cctgaagaattatttttaatgcccaaccatgttttacaggcattaaatcaattccctcga
attttggcttcagctgaagctttagagaccaaggcgggtgtacttaatatcgccgctgag
gaaccgcctaaactggcagttgatccgaaaaaggaacaacctttccaagcagtgaagcat
tatatcgaccaagccaagcatcctgttttattggtagcagagagtgcgggccgtcgagaa
acgctaaaagatgcgctgcgtggtgtgttgggtgaaattcaaaatgtagatacttttgct
caattccaaaaagataagttgcaggttgcgattaccagtgcacctctggatcgagggctg
ttgctgactaatcagctgtctgtaatttcggaaaatcagctttatgaacaccgtgtggta
caacgccgccgtaaacgccagcaagaagtttctgaagagttcttgatccgtagtttaacc
gagttgagtattggtgcacctgtcgtacatatcgatcatggtgtagggcgttacgcaggt
ttaattactctggaaatcgatgagcaggatcatgagttcttgcagcttgattatgctgat
ggcgctaaagtctatgtgcctgtaaccaatttacatctgattagccgttatagtgggggt
gatcctgatttagccccattgcataaattggggacggatacttggagcaaagcgaagcgt
aaagctttggagcaaatccatgatgttgctgcagagttattgcatattcaggcccgtcgt
caatccaaacctggttttgcttttgaactcgatcatacgggatatatgcaattctccagc
ggctttgcctatgaagagactttagaccaagctaacgcaattgaagcaacccttcatgat
atgcagctggctaaaccgatggatcgtttggtatgtggagacgtgggttttggtaaaacc
gaagtcgcgatgcgtgcagcattcgttgcggtacaaaataataagcaagttgcagttctg
gtacccacgaccttgttagcacagcaacattatgagtcttttaaagatcgttttgccgat
acagcggtacgcattgaagtattgtcgcgttttggcagcaataagactcacctaaaaacc
attgaagatttggctgaaggcaaagtcgatattgtggtgggaacgcataaaatcttgcaa
gaaaacatccaattcaagaatcttggactcatgattgtcgatgaagagcatcgttttggt
gttcgcgacaaagaacggatcaaagccttacgtgccgatgtggacatgctgaccttaacg
gcgaccccgattccacgtaccttgaatatggcattttctgggatgcgtgatctctcaatt
attgcaacaccgcccgcccgccgtttagccgtgaaaacctttgtgcaagaacacactgat
gattcggtcaaagaagcgattctgcgtgagttattacgtggtggtcaggtgtacttgtta
cacaatgaggtggatactattgaacgtgctgctgaaagtattcgtaatttagtgccagaa
gcgcgcgtcgccgtggcgcacgggcaaatgcgagaacgtgaactcgagcaggtgatgcag
cagttctaccacaaagaatataacgtgttggtttgttcaaccattatcgaaacgggtatt
gatgtgccgaatgccaataccatcattatcgagcgcgcggataaactgggtctggcgcaa
ctgcatcaattgcgtggtcgtgttggacgttcgcatcaccaagcctatgcctatttatta
gtaccgtcgatcaagcatctgaaaggtgatgcagaaaagcgtcttgatgctattcaacgt
gcttccactttaggcgcgggttttatgctggcaaccgaagacttggaaattcgaggcgct
ggtgaattacttggtgaacagcaaagcggttcaatgcaggcgattggttatagtctgtat
atggaaatgctcgaaaaagcaaccaaagccattcaaaaaggcaaaacaccgaattttgat
gcgccgttgtcattaactgctgaaattaatttacatatgcctgcgttgattccagatgat
tatctaggtgacgtacatcagcgcctgttgttctataagcgcattagtaataccgatagt
caggagaagctcgacaatatccgtatggaattaattgatcgttttggtattccgccacaa
cctgtgaagcaattgtttagtgtgcatcagctacgcctacgtgccgaacaattgggaatt
accaaaattgatatcaatagtaatgggggatatatcgagttttcaccggatacccctgta
caggcgatcagtatcattcaattgatgcagaaaaatccgacttattaccgaatggaaggt
gggcagcgcttgaaagtcacagtgcaattggctgagtacgataagcggattcagttcatt
gtcgacttgctaaacaagctcttgagcgagttaaattga
DBGET
integrated database retrieval system
