Agarivorans sp. TSD2052: M0C34_02350
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Entry
M0C34_02350 CDS
T08089
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agz
Agarivorans sp. TSD2052
Pathway
agz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M0C34_02350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agz03021
]
M0C34_02350 (rpoC)
03400 DNA repair and recombination proteins [BR:
agz03400
]
M0C34_02350 (rpoC)
Enzymes [BR:
agz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M0C34_02350 (rpoC)
Transcription machinery [BR:
agz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M0C34_02350 (rpoC)
DNA repair and recombination proteins [BR:
agz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M0C34_02350 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UPW19137
LinkDB
All DBs
Position
496096..500301
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDFECLCGKYKRLKHRGVICEKCGVEVTQSKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVTEPGMTSLERGQMLTEETYLDSLEEYGDEFEAKM
GAEAVLALLRHLELDQEIEVMREELQTTNSETKRKKTTKRLKLMEAFRDSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREGGEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RSLMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERVNAQAEGMYLSGPKEAEKLYRSQ
QASIHARVNVRITEVVVAEDGSKIEKTEIKKTTIGRAILWLIVPKGLPFDLVNQAMGKKQ
ISGLLNTCYRKLGLKHSVIFADQLMYTGFHYATLSGASVGINDMVIPDAKKDIVEEASDE
VSEIQEQFLAGLVTAGERYNKVIDIWASANEKVSKAMMDNLSTEVVMNRDGEEETQDSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTDTDCGTEEGILMTPHIEGGDVVEPLRERVL
GRVLVGDVIKPGTENEVLLKSKTLLDEKLCDLLEENSVDTVKVRSVISCANDFGVCALCY
GRDLARGHLVGRGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAENSIQVKNVGTIK
LHNAKVVTNNEGKLVVTSRSTELTIIDEMGQTKESHKLQYGSILDVVDGGAVKSGDIVAN
WDPHTHPIITEVPGRIKFVDMVEGVTISRQTDELTGLSSIHVLDPNERPGAGKEMRPMVK
LVDDKGNDVLIAGTDIPAQYFLPSKAIVNLEDNAEVGVGDAIARIPQESSGTKDITGGLP
RVADLFEARQPKEPAILAEVSGTISFGKETKGKRRLVITPSDADAYEEMIPKWRNLNVFE
GEKVQKGEVIADGPESPHDILRLRGISPVANYIVNEVQDVYRLQGVKINDKHIETIVRQM
LRKCLILDAGDSSFLLGEQAEVARVNIENRQLVADGKRPAVYRRELLGITKASLSTESFI
SAASFQETTRVLTEAAVGGKQDELRGLKENVIVGRLIPAGTGYAYHEKRRARSEAPAPIT
ADEAADNLAALLNAAPTSDSE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaagcaagaccgaagagtttgaaggcatt
aaaattggcctagcttcacctgatcagatccgtagttggtcgtttggtgaagttaaaaaa
ccagaaacgattaactatcgtacctttaagccagagcgcgatggacttttctgtgcccgt
attttcggcccagtaaaagatttcgaatgtttgtgtggtaaatacaagcgtctgaagcac
cgtggtgttatctgtgagaagtgtggcgtagaagttactcaatcaaaagttcgccgtgac
cgtatgggacacatcgaacttgcatcgccagtggctcacatctggttccttaagtcttta
ccatcgcgtattggcttattgcttgatatgacactgcgtgacattgaacgcgttctgtac
ttcgaatcatttgtagttactgagcctggcatgaccagcttagaacgcggtcaaatgtta
accgaagaaacttacttagattctctagaagaatacggtgacgaattcgaagctaagatg
ggtgcagaagctgtattggctttattgcgtcatttagagcttgatcaagaaatcgaagta
atgcgcgaagagttgcaaacaactaactctgaaactaagcgtaagaagaccactaagcgt
cttaagcttatggaagcgttccgtgattcaggtaataaacctgagtggatgattatgacc
gttttaccggttcttccaccagatttacgtcctctagtaccactagatggcggccgtttt
gcgacttctgatttgaacgatttgtaccgccgtgtaatcaaccgtaacaaccgtttgaag
cgtttactagacctagccgccccagatatcatcgtgcgtaacgaaaagcgtatgctgcaa
gaagcagttgatgccttgttagacaatggtcgtcgtggtcgtgctattactggttctaac
aagcgtccgcttaaatctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgagtagattattcaggccgttcggtaattaccgttggtcctaca
ctgcgtttgcaccagtgtggtttacctaagaaaatggcacttgagctattcaaaccattc
atttatggcaagctagaacttcgtggtttagcgactacgattaaagctgctaagaaaatg
gttgaacgcgaaggcggcgaagtgtgggatattcttgaagaagttatccgtgaacaccct
gtattacttaaccgtgcacctactttgcaccgcttgggtattcaagcctttgagccagtg
ttaattgaaggtaaagcgattcaattacacccgctagtttgtgcggcttataacgccgac
ttcgatggcgaccaaatggcggtacacgtaccgttgactattgaagcgcagttagaagca
cgttcgttgatgatgtctaccaacaacgtattatcgccagctaatggtgaaccaattatt
gttccttctcaagacgttgtattgggtctgtactacatgactcgtgaacgtgtgaatgcg
caagcagaaggaatgtatctgtcaggtccgaaggaagctgagaagctttatcggtctcag
caagctagcatacatgctcgagtaaacgtacgtattaccgaagtagttgtagcggaagac
ggatcaaaaatagaaaaaactgaaatcaaaaagaccactatcggccgtgctattttatgg
ttaatcgtaccaaaaggcctgccgtttgatttagttaaccaagcaatgggtaagaagcaa
atctcaggtttgctaaacacctgttaccgtaaactaggtcttaagcattcagttattttc
gctgaccaattaatgtataccggtttccattacgcaacgctgtcaggtgcctctgtaggt
atcaatgacatggttattcctgatgctaagaaagacatcgtggaagaagccagtgatgaa
gtaagtgaaattcaggagcaattcctagcgggcctcgtaaccgcaggcgagcgttacaac
aaagtaatcgatatttgggcttcggctaacgaaaaagtatcgaaagcgatgatggacaac
ttgtctaccgaagtggttatgaatcgagatggcgaagaagagactcaagactctttcaac
agcatctttatgatggccgattcgggggctcgtggtagtgctgctcagattcgtcagttg
gcgggtatgcgtggcttgatggcaaaaccggatggttcgattatcgaaacaccgattgta
gccaacttccgcgaaggcttgaacgtacttcagtacttcatctcaacgcacggtgcgcgt
aaaggtttggccgatacagcacttaaaacagcaaactcgggttacctaactcgtcgtttg
gtggatgttgctcaagatttggtcgttaccgacactgattgtggtaccgaagaaggtatc
ttgatgacgcctcatattgagggtggtgatgttgttgagccattacgtgagcgtgttcta
ggccgtgtattagttggcgatgtaattaagccaggtactgaaaacgaagtattgcttaag
tctaagaccttacttgacgaaaaactgtgtgaccttcttgaagagaactcagtggatacg
gttaaagttcgctcggtgattagctgtgctaacgattttggtgtttgtgcactttgttac
ggtcgtgacttagcgcgaggccacttagtgggtcgcggtgaagcggttggcgttgtcgct
gctcagtcaattggtgagccgggtactcagcttaccatgcgtaccttccacattggtggt
gcggcatcgcgtgcggctgcagaaaacagtatccaagttaaaaacgtgggtaccattaaa
ctgcataacgcgaaagttgttaccaacaacgaaggcaaattggttgtaacgtctcgttca
accgaattgacgatcatcgatgagatgggccaaaccaaagaaagccacaaacttcaatac
ggtagtattttagatgtggttgatggtggcgctgttaaatctggcgatattgttgctaac
tgggacccgcatacgcacccaattattactgaagtacctggtcgtattaagtttgttgat
atggttgaaggcgtaacgattagccgtcaaacagatgaactaaccggcctatcaagtatt
cacgtattggatcctaacgagcgccctggtgctggtaaagaaatgcgtccaatggtgaag
ctggttgatgataaaggtaatgacgtattaattgctggtactgatattcctgcacagtac
ttcctgccaagtaaagcgattgttaacttggaagataatgctgaagtgggtgttggtgat
gcgattgctcgtatacctcaagaatcaagcggtaccaaagatattaccggtggtctgcca
cgcgtagctgacttgttcgaagcgcgtcaacctaaagagcctgctatcttagctgaagtg
agcggtactattagtttcggtaaagaaactaaaggtaagcgtcgtcttgttattactcct
agtgatgccgatgcatacgaggaaatgattcctaagtggcgtaacttgaatgtatttgaa
ggtgagaaagttcaaaaaggtgaagttatcgccgatggaccagagtctccacatgacatt
ctacgcttacgtggtatcagccctgttgctaactacattgtaaatgaagtacaagacgta
tatcgcttacaaggtgtgaaaattaacgataagcacattgagacaatcgtgcgtcaaatg
cttcgtaagtgtttgattcttgatgctggtgattctagcttcttgctaggtgaacaagcc
gaagttgctcgcgttaatattgaaaaccgtcagttagttgccgatggcaagcgccctgct
gtataccgtcgtgaattgctaggtattaccaaagcatcgctgtctacagagtcatttatc
tctgcagcttcgttccaggaaactactcgtgtgcttacagaagcagcagtaggcggaaaa
caagacgaacttcgcggtcttaaagagaacgtgattgttggtcgattgattccagctggt
acaggttatgcgtatcacgaaaaacgtcgtgcgagatcagaagctccggctccgatcact
gctgatgaagctgctgataacttagctgctttgttaaacgctgcaccgactagtgattca
gagtaa
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