Agarivorans sp. TSD2052: M0C34_10125
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Entry
M0C34_10125 CDS
T08089
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
agz
Agarivorans sp. TSD2052
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agz03016
]
M0C34_10125
Enzymes [BR:
agz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M0C34_10125
Transfer RNA biogenesis [BR:
agz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M0C34_10125
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
Rho_RNA_bind
S1CSD-TOTE-2
DUF3035
Motif
Other DBs
NCBI-ProteinID:
UPW20584
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Position
2220393..2222321
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AA seq
642 aa
AA seq
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MFKDNPLLAQLKQQIRETIPTVEGVVKATDKNFGFLQTDNKKSYFISPPFMKQLVHGDRI
SAVVRESNGKEAAEPEELIEAALDTFIARVKFVDSRTKVIVDHPLINQALNAKVIKDSGF
SIKEGDWVKARLIKHALKEKHFQAEIFEYVAENDDSFARWKATTAKHQLAWDQPEYEAEL
SLLDPSAERRDISNELFFTIDGESTKDMDDAVSIVAKDEGWSLKVAIADPSAYLAEGSAL
EAVAAKRAFTLYLPARTVPMMPSKLANEKCSLLAGQERPALVCEMTITGSGELLDDARFY
LATVKSGHRLNYTQVSNFLEQNNEEFSQDQALQLALRELEKMSQQRHQWRTENTSVFGDQ
SDYDFVLDNKGRVIDIVCQARRAANRMVEEAMIAANVSGGRYLDKHLGFGVFACHSGFKP
EKVDSLIELLAKFDITADKDQLYDLEYFCQLRRTILATNNKRLDQLVKRHFNFGIYSEQC
LPHFGLGEAKYATWTSPIRKYSDLLNHRLIKCALAGEQPSSPLTEQLTEHLSEYRKRHKF
AEREMANFLYCEYFAEQDATTCLDAEITNVNRGGLNVRLLASGAPAFIPKTKLAAKDQEL
TIESELGYIATGDLQYNLGDTVSVRVVEVKKLQQTIIAALCE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaagataaccctctattagcccagctaaagcagcaaattagagagacgattcca
acggttgaaggtgttgttaaagctaccgataaaaactttggttttttacagactgacaat
aaaaaaagctattttatttcccctcccttcatgaagcagttggttcatggtgaccggatc
agtgcggttgttagagaaagcaacggaaaagaagcagcagagccagaagaactcatcgag
gcggcccttgatacttttatcgcacgggtaaagtttgttgatagtcgtactaaagttatc
gttgaccatcctttaattaatcaagcccttaacgcaaaagtcattaaagacagtggtttt
tctataaaagaaggggattgggttaaagctaggctgattaaacacgccctaaaagaaaag
catttccaagctgaaattttcgaatatgtagctgaaaacgatgacagctttgctcgatgg
aaagcgaccacggctaagcatcaattagcgtgggaccagccggaatatgaagccgaactg
agtttgctagaccccagcgcagaacgccgcgatatcagcaacgaattgtttttcaccatc
gatggtgaaagcaccaaagatatggatgatgcggtatctattgttgctaaggatgaaggg
tggtcgcttaaggtagccattgccgatccaagcgcctatttagccgaaggcagcgctctt
gaagcggtggccgcaaaacgggcctttactctctatcttcctgctcgcaccgttccaatg
atgcctagtaaattagccaatgaaaagtgttcgctgttggcggggcaagagcgccctgct
ctggtctgtgaaatgaccattacaggatccggtgagttactagacgacgcacgcttttat
ttagcaaccgttaagtcaggacatagactcaactacactcaagtctcaaattttttagag
cagaacaacgaagagtttagtcaggaccaagctctacaactggctttgcgcgaactagaa
aaaatgagtcaacaacgtcaccaatggcgtaccgaaaacacttctgtgtttggtgaccaa
tcagattacgactttgtattggacaataaaggccgggtcattgatattgtttgccaagca
cgacgcgcagccaaccgaatggttgaagaggcaatgattgcagccaatgttagcggtggt
cgatacctggataagcatttaggcttcggtgtgtttgcctgccactctggatttaagcca
gagaaagtggattctcttatcgagttattagctaaatttgatattactgccgacaaagac
caactttacgaccttgagtatttttgtcagcttagacgaaccatcctcgcgacaaacaat
aaacgcttagaccaattagtaaaacgccatttcaattttggtatttacagtgagcagtgt
ttaccgcattttggattaggtgaggctaagtacgccacttggacgtctccgatacgaaaa
tacagcgatttattaaatcaccgtttaataaaatgcgcacttgcgggcgaacaaccatct
tcacctttaacagaacagctaactgagcatttaagcgagtatcgtaaacgccataagttt
gctgagcgtgaaatggcaaacttcttgtattgtgaatattttgcagagcaagatgctaca
acttgcttagatgcagaaatcacgaatgttaaccgtggcggattaaatgtacgcttattg
gctagcggtgcgcctgcatttatccctaagactaaattagccgccaaggatcaagagtta
acgattgagagtgagttaggttatattgctacgggtgatctgcaatacaatctcggtgac
acagtttctgtgcgagtggtagaagttaaaaagctacagcaaacaattatcgcggccttg
tgtgaataa
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