Agarivorans sediminis: M0C34_10395
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Entry
M0C34_10395 CDS
T08089
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
agz
Agarivorans sediminis
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agz03032
]
M0C34_10395 (topA)
03400 DNA repair and recombination proteins [BR:
agz03400
]
M0C34_10395 (topA)
Enzymes [BR:
agz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
M0C34_10395 (topA)
DNA replication proteins [BR:
agz03032
]
Prokaryotic type
DNA Topoisomerases
M0C34_10395 (topA)
DNA repair and recombination proteins [BR:
agz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M0C34_10395 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
HVO_A0261_N
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
UPW20629
LinkDB
All DBs
Position
complement(2270703..2273333)
Genome browser
AA seq
876 aa
AA seq
DB search
MSKSLVIVESPAKAKTINKYLGRQYVVKSSVGHIRDLPSSGSATNKKKAAPVSTKGMSAE
EKAKLKAAKDKKALVARMGVDPEKDWKANYQILPGKEKVVNELKTLAENADTIYLATDLD
REGEAIAWHLKEIIGGDDSRFKRVVFNEITKSAIKDAFSQPSELNMDRVNAQQARRFLDR
VVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEKEREIKAFVPEEYWDIHADLATQLGEG
FRLEVAKENGQAFKPVNQQQATAAIDSLKGADYQVAKREDKPTRSKPKAPYITSTLQQAA
STRLSFGVKRTMMLAQRLYEAGYITYMRTDSTNLSNDAVEAARGYIVDNFGDKYLPENPL
RYSSKEGAQEAHEAIRPSDVTVVSEHLDGVDADAKRLYDLIWRQFVACQMTDAQYDATTI
TVTAAQFELRARGKILRFEGWTKVQPVGKANKAEDGVLPAVTKGDSLKLVELDPKQHFTK
PPARFNEASLVRELEKRGIGRPSTYASIISTIQDRGYVRTDARRFYAEKMGEIVAERLTE
SFQDLMSYDFTAEMEERLDEVADGSFEWKQVLNEFYKNFKGQLSKADDDENGMRSNTPVI
TDIKCPDCERPMGIRTASTGVFLGCSGYALPPKERCKCTINLIPGEEAVAADSEEQETEA
LRAKERCPICGTAMDSYLIDETRKLHVCGNNPDCEGYVVEQGSFKIKGYDGPIVECEKCG
SDMQLRTGRFGKYMACTGEDCSNTRKILKSGEVAPPREDPVHLPELECVNSDAYFVLRDG
ASGIFMAASNFPRSRETRAPLVEELKRFRDRLPEKFYYLADGPVADPDGVKSLVRYSRKT
KEQYLSTEVEGKATGWRAYHTDGKWVIEDKRKKPKK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatctctggtaatagtagaatcaccagctaaagcaaaaacgattaacaaatac
ttgggtcgccaatatgtggtgaagtcgagtgttggtcatattcgtgatttgcctagtagt
ggtagcgcgacaaataaaaagaaagccgcacctgtttcaaccaaaggaatgagcgcagaa
gaaaaagccaaactcaaagctgctaaagataaaaaagccttagtggctcgtatgggggta
gaccctgagaaagattggaaggctaattatcaaattcttcccggtaaagaaaaagtcgtt
aatgagctcaaaactctcgccgaaaatgctgacaccatctatctcgcaaccgatttagac
cgcgaaggagaggcaatagcgtggcacttgaaagaaatcattggtggggacgatagtcgc
tttaagcgcgtggtatttaacgaaatcaccaagtctgcgattaaagatgcattttctcag
cctagcgaattgaacatggaccgagttaatgcccaacaagctcgtcgctttctagatcgc
gtagtgggttacatggtttcaccgctgctttggaaaaaaatagcgcgcggcttatctgct
ggccgtgttcaatccgttgccgttcgtttagtggtagagaaagaacgagaaattaaagca
tttgttcctgaagagtactgggatattcatgctgatttagcaacccaattaggtgaaggc
ttccgtctagaggtggccaaagaaaatggtcaagcatttaaaccggttaatcaacagcag
gctaccgctgccattgatagtttaaaaggcgcagattaccaagtggccaagcgtgaagat
aagccgacacgctctaaacccaaagccccttacatcacctctacactgcaacaagctgca
agcacccgtttaagctttggcgtaaaacgcaccatgatgttagctcaaaggctctatgag
gccggttacatcacttacatgcgtacagactcaactaacttgagtaacgatgctgtagag
gctgccaggggctatattgtcgataattttggcgataagtatcttccagaaaatcctttg
cgctactcaagcaaagaaggcgcccaagaagcacacgaagcaattcgaccatcagacgtc
acagtagtgagtgagcatctagatggcgtagatgccgatgcaaaacgactttacgatctt
atctggcgccaatttgtggcatgtcagatgactgacgctcaatacgatgcaactactatt
acagtcactgccgcacaatttgaactgcgggctcgcggcaagattttgcgcttcgaaggt
tggactaaagtacagccagttggcaaagctaacaaagcagaagatggcgtgttacccgcg
gtaaccaagggtgattcgctcaagcttgttgaactcgatccaaaacaacactttactaag
ccaccagcgcgttttaacgaagcttcgctagtacgagaattagaaaaaagaggcataggg
cgaccatcgacttacgcatctatcatctctaccattcaagaccgtggttatgtacgtacc
gacgcgcgtcgcttttatgccgaaaaaatgggcgagattgtcgctgaacgcttaaccgaa
agtttccaagatctaatgagctatgacttcactgccgagatggaagagcgtcttgacgaa
gtcgcggatggcagctttgagtggaaacaagtgttaaatgaattctataaaaatttcaaa
ggtcagttaagtaaagctgatgacgatgaaaatggaatgcgtagcaataccccggtgatc
accgatatcaaatgtccagattgtgaaagacctatgggcattcgcactgcgagcacgggt
gttttcttgggttgttcaggttatgcactgccgccaaaagaacgttgtaagtgtacgatc
aatttgatcccaggcgaggaggcggtggccgccgactcagaagaacaagaaaccgaagcg
ttaagggctaaagaacgttgcccaatctgtggcactgccatggatagctatttaatcgac
gagacgcgtaaactgcacgtctgtggtaataaccccgattgtgaaggttatgttgtcgag
cagggtagctttaagataaaaggctacgatggccccattgtcgagtgtgagaagtgcggt
agtgacatgcaattgcgtactggccgctttggtaaatacatggcttgcactggtgaagat
tgcagcaacacccgtaaaattcttaagagtggggaagttgcaccaccacgggaagatcct
gttcacctccctgaattagaatgtgttaatagcgatgcttacttcgtattacgggacggt
gcctcgggtatctttatggcggcgagtaacttcccacgctcccgggagactcgtgctcct
ttagtggaggagttaaaacgctttagagatcgcctacctgagaaattctactatttagcc
gatgggccagtcgctgatcccgatggggtaaaatcgttagtgcgatacagccgtaaaacc
aaagagcagtacttaagtactgaagttgaaggcaaagcaaccggttggcgcgcctatcac
accgatggtaagtgggtgatagaagacaaacgtaaaaagccgaagaaatag
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