Agarivorans sediminis: M0C34_11070
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Entry
M0C34_11070 CDS
T08089
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
agz
Agarivorans sediminis
Pathway
agz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0C34_11070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agz03019
]
M0C34_11070
03009 Ribosome biogenesis [BR:
agz03009
]
M0C34_11070
Enzymes [BR:
agz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M0C34_11070
Messenger RNA biogenesis [BR:
agz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0C34_11070
Ribosome biogenesis [BR:
agz03009
]
Prokaryotic type
rRNA helicases
M0C34_11070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
HEM4
UvrA_inter
Cas3-like_C_2
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
UPW16790
LinkDB
All DBs
Position
complement(2441608..2443335)
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AA seq
575 aa
AA seq
DB search
MTESSSSSFEQFALPETILKAISEIGFETPSPIQEKTIPLLLEGHDVLGLAQTGTGKTAA
FSLPLIAKLDPKLNVPQMLVLAPTRELANQVADAIKDFSRHIPGLRVLAIYGGADYGQQI
KELRRGPQIIVGTPGRTIDHLDRGKLKLDQLKALVLDEADEMLRMGFIDDVERIMRDMPK
ERQTALFSATMPPAIKNITKNYMSEPKEVKIAAKTQTVSNIEQHYWHVAGINKIEALARI
LEVNSDGASIIFARTKTSTTEIAERLEAKGFSVAALNGDMNQTMRERTITRLKSGKLDIV
VATDVAARGLDVERIGLVVNFDIPYDAEAYVHRIGRTGRAGRSGKAVMFVGYREQRLLRN
IERVTRQQITQMQLPTREEMEKKRVESFQEKLSSAVANVELADYQKIASELAESMGMTEL
ELATALLFQAQTARPFKMPADPEVRSPRFAGNNERNPRGDRNSRGDRGRGERSERGGDRP
SRNEAGAAKRKRRTADVEMNTYRVDAGKEHGVQTKHIVGAIANEANISSDYIGSVKLFDD
YSTVELPSGMPEKTFNHLKRSFVRQRAMRLELIAQ
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgacagaatccagcagttcaagttttgagcaattcgctctacctgaaacgattttaaaa
gcgatttccgagattggatttgagacaccgtctccgattcaggaaaagaccattccatta
ctgctggaaggacatgatgtacttggcttagcacagaccggaaccggcaaaacagcagcg
ttctctttgcctttgattgcaaagttagaccctaaactcaacgtgcctcagatgttagtt
ctagcgccaactcgtgaactagctaatcaagtagctgacgcgattaaagactttagccgt
catattccagggctacgtgttctggccatatacggtggggcagattacggtcaacaaatt
aaagaactacgtcgtggtccacaaattatcgtgggtactccaggccgtacaattgaccac
ttagatcgtggcaagcttaagcttgatcaacttaaagccttagtattagacgaagcagac
gaaatgctacgtatgggctttattgatgatgtagaacgtatcatgcgtgatatgccaaaa
gagcgtcaaaccgctttgttctcagcgaccatgccgccggcaattaaaaacatcacaaaa
aattacatgtctgagccaaaagaagtaaaaattgcggctaagacacaaacagtctctaac
attgagcaacattactggcatgtagctggcattaataagatagaagcgctagcccgtatt
cttgaagttaatagtgatggcgcatcaatcattttcgctcgaactaaaacctctaccaca
gaaattgctgagcgtttagaagctaaaggtttcagtgttgccgcattaaacggtgatatg
aaccaaacgatgcgcgaacgcactattacgcgtttgaagtctggtaaattagacatcgtt
gttgcaactgatgtagcggcccgtggcttagacgttgagcgtattggcttggtggttaac
ttcgacattccttatgacgctgaagcttatgttcaccgtattggtcgtactggccgtgct
ggtcgtagcggtaaagcggtcatgtttgtaggctaccgtgagcaacgtttgttgcgtaac
attgagcgcgtaactcgccagcaaataacccaaatgcaactacctactcgtgaagagatg
gagaaaaagcgtgtagagagcttccaagagaaactttcttcagctgttgcaaacgtcgag
ttggctgattaccagaagatagcttctgagttagccgaaagtatgggtatgacagagctt
gaattagcgactgcattattattccaagcgcaaaccgcgcggccgtttaaaatgcctgcc
gatcctgaagttcgatcacctcgattcgctggaaataacgagcgtaacccacgtggtgat
cgcaattctcgcggtgacagaggccgcggtgaacgttctgaacgcggtggcgatcgtcca
agtcgcaacgaagcgggtgccgctaagcgcaaacgccgtactgcagatgttgaaatgaat
acttaccgtgttgatgctggtaaagagcacggtgttcagactaaacatattgttggtgct
attgcgaatgaagcaaacatcagcagtgattacattggtagtgtaaagttgtttgatgac
tactctacggttgaattaccgagtggtatgccagaaaagacatttaatcacttaaaacgt
agctttgttcgtcaacgtgcgatgcgtttagaattgattgcccaatag
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