Agarivorans sp. TSD2052: M0C34_11925
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Entry
M0C34_11925 CDS
T08089
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
agz
Agarivorans sp. TSD2052
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agz03032
]
M0C34_11925 (hupB)
03036 Chromosome and associated proteins [BR:
agz03036
]
M0C34_11925 (hupB)
03400 DNA repair and recombination proteins [BR:
agz03400
]
M0C34_11925 (hupB)
DNA replication proteins [BR:
agz03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
M0C34_11925 (hupB)
Chromosome and associated proteins [BR:
agz03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
M0C34_11925 (hupB)
DNA repair and recombination proteins [BR:
agz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
M0C34_11925 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
HU-DNA_bdg
ACP_syn_III_C
Motif
Other DBs
NCBI-ProteinID:
UPW16954
LinkDB
All DBs
Position
complement(2633447..2633719)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKAQLVDKIAEGADISKAAAGRALDSFIEAISETLKEGDNVALVGFGTFQVKERSARTG
RNPQTGAEIQIAAANVPSFKAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagctcaactcgtagacaaaattgctgaaggtgcagatatttctaaggccgct
gccggccgtgcactagattcttttatcgaagcgatttctgaaactttgaaagaaggtgat
aacgttgccttggtaggctttggtactttccaagtgaaagaacgttcagcccgtactggt
cgcaatccgcaaaccggtgcagagattcaaattgccgctgctaacgttccttcgtttaaa
gccggtaaagcgttgaaagacgccgtaaactaa
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